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 Sections & Scopes for BIOCHEMISTRY   [ printable version Printable version ]

SECTION
SCOPE
BiocatalysisBiocatalysis
Enzyme complexes
Enzyme engineering
Enzyme mechanisms
Metabolic engineering
Metabolic pathways
Natural products biosynthesis
Novel enzyme cofactors
Radicals
Regulation

Bioinorganic chemistryBiominerals & biomineralization
Chemistry of NO
Electron transport & oxygen metabolism
Hydrolytic & water chemistry
Metal ion uptake, storage, & metabolism
Metal-dependent sensors/regulators
Metalloenzymes with radical intermediates
Metal-nucleic acid chemistry
Metals & medicine
Molybdenum & tungsten
Nitrogen, sulfur, hydrogen, & carbon metabolism

Biomacromolecule-ligand interactionsInhibitors
Protein binding studies
Structural basis of binding
Theoretical aspects of binding

Biomimetic chemistryArtificial catalysts
Chemical models for biological processes
Cofactor models & surrogates
Dendrimers
Designed complexes & arrays
Micelles, liposomes, membranes
Molecular computing
Molecular devices & sensors
Reaction networks
Receptors & recognition
Transport & channel design

Cell signalling & trafficking structuresApoptotic pathways
Developmental pathways
Extracellular receptor ligand interactions
G-protein coupled receptor signalling
Intracellular receptor domain interactions
Kinases & phosphatases
Nuclear import/export
Second messenger generation & responses
Signalling in the immune system
Small GTPases & their regulation
Vesicle targeting & fusion

Chemical biology of the cellCell surface engineering
Chemical genetics
Intracellular monitoring
Metabolic pathway engineering
Modulation of signal transduction
Protein-protein interactions
Receptor-ligand interactions
Sensors & imaging
Single cell metabolite assays
Transcriptional regulation & control

Directed molecular evolutionAptamers
Bioprospecting & enzyme discovery
Catalytic antibodies
Combinatorial biosynthesis
Directed evolution
Generation of diversity
In vitro selection
Molecular ecology
Phage/ribosome display
Theoretical foundations of molecular evolution

Experimental biophysical methodsCalorimetry & kinetic measurements
CD, fluorescence, raman, EPR & other spectroscopy
Centrifugation & hydrodynamic methods
Chromatography & electrophoresis
Electron microscopy
Neutron scattering & diffraction
NMR
Scanning, tunnelling, atomic force & x-ray microscopy
Single molecule methods
Sub-nanosecond processes
X-ray crystallography

Macromolecular assemblies & machinesMicrotubules & microtubule associated proteins
Multi/large enzyme complexes
Muscle & muscle proteins (actin/myosin/tropomyosin/acrosomal bundle)
Organelles
Other macromolecules: amyloid fibres
Other macromolecules: chromatin
Other macromolecules: clathrin & endosomes
Other macromolecules: intermediate filaments
Other macromolecules: pili
Other molecular machines: bacterial cell division
Other molecular machines: bacterial flagella
Other molecular machines: chaperones
Other molecular machines: DNA packaging
Other molecular machines: nuclear pore complex
Other molecular machines: ribosome
Other molecular machines: splicing machinery
Rotary machines (ATP synthases, RNA & DNA helicases & other hexameric machines involved in DNA packaging)
Viruses

Macromolecular chemistryCarbohydrates (including glycosaminoglycans & polysaccharides)
Chemical synthesis of natural & non-natural proteins
Glycoproteins & glycolipids
Lipids, liposomes, membranes
Macromolecular arrays, synthesis & analysis of macromolecular arrays (AFM, SPR, etc., new patterning methods, etc.)
Macromolecular conjugates
Microarrays
Non-natural biologically active polymers
Non-natural glycoconjugates & glycoprotein analogs
Nucleic acid analogs
Nucleic acid catalysis
Protein modification
RNA/DNA folding

Membrane proteins & energy transductionABC transporters
ATP synthases (F & V type)
Beta-barrel membrane proteins
G-protein coupled receptors & archaebacterial retinal-binding proteins
Ion channels & gating: ligand-gated ion channels, voltage-gated ion channels
Other channels (water, mechanosensitive, etc.)
Photosynthetic membrane proteins
Protein translocases
P-type ATPases
Respiratory chain complexes
Secondary transporters
Transporters in mitochondria, including uncoupling proteins

Protein chemistry & proteomicsAnalysis of protein-protein interactions
Folding
Modification
Novel drug targets
Protein arrays
Protein design
Protein expression & secretion
Protein expression mapping
Protein separation & identification

Protein foldingAb initio protein structure prediction
Analysis & classification of protein folding patterns
Computational models of protein folding
Folding & assembly of membrane protein complexes
Mechanisms of protein folding & unfolding reactions
Role of extrinsic factors in protein folding reactions
Statistical mechanics of protein folding
Structural & dynamical analyses of partially folded proteins (e.g. molten globules & unfolded states)
Thermodynamic properties of folded proteins

Small molecule chemistryCombinatorial chemistry
Discovery of natural products
Lead optimisation
Natural product biosynthesis
Novel enzyme co-factors & mechanistic probes
Screening technologies
Structure based drug design

Structural genomicsCrystallization & structure determination by x-ray crystallography
Database infrastructure
Functional annotation of protein structures
NMR spectroscopy: protein structures & innovations in HTP methods
Protein production (cloning, expression, purification, biochemical characterization)
Protein sequence & structure comparisons/families
Target selection

Structure: RNAAptamers & riboswitches
Cation & water interactions
Cruciforms & junctions
Crystal structures of RNA
Drug-DNA complexes
Dynamics & energetics
Nucleic acid NMR
Ribosome structural biology
Ribozymes
RNA enzymology
RNA folding
RNPS
tRNA

Structure: replication & repairDNA Damage
DNA Damage signalling, checkpoints
DNA glycosylases
DNA ligases
DNA polymerases
DNA Recognition
Enzymatic activities
Helicases
Nucleases
Recombination proteins
Single-strand Binding
Topoisomerases

Structure: transcription & translationChromatin-modifying enzymes
DNA structure
DNA-modifying enzymes
mRNA processing
Nucleosomes & chromatin
Ribosomes
RNA polymerases
SRP & translocons
Transcription factors
Transcriptional regulators
tRNA synthetases

Theory & simulationComputer simulations
Electrostatic interactions
Folding
Free-energy changes & properties
Quantum chemistry
Structure prediction
Supramolecular structures
Water & aqueous solutions



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