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 Sections & Scopes for BIOINFORMATICS   [ printable version Printable version ]

SECTION
SCOPE
Animal geneticsAnimal models of disease
Behavioural genetics
Cloning
Epigenetics
Knockouts
Transgenic models

BioinformaticsAlgorithms
Comparative genomics
Computational genomics
Databases
Linkage analysis
Statistics of sequence comparison
Structural biology

Biomacromolecule-ligand interactionsInhibitors
Protein binding studies
Structural basis of binding
Theoretical aspects of binding

Cell signalling & trafficking structuresApoptotic pathways
Developmental pathways
Extracellular receptor ligand interactions
G-protein coupled receptor signalling
Intracellular receptor domain interactions
Kinases & phosphatases
Nuclear import/export
Second messenger generation & responses
Signalling in the immune system
Small GTPases & their regulation
Vesicle targeting & fusion

Evolutionary/comparative geneticsComparative evolutionary genomics
Evolution of genetic systems
Evolutionary genetics
Evolutionary genetics of phenotype
Phylogenetics & taxonomy
Population genetics
Quantitative evolutionary genetics & QTL mapping
Speciation

Experimental biophysical methodsCalorimetry & kinetic measurements
CD, fluorescence, raman, EPR & other spectroscopy
Centrifugation & hydrodynamic methods
Chromatography & electrophoresis
Electron microscopy
Neutron scattering & diffraction
NMR
Scanning, tunnelling, atomic force & x-ray microscopy
Single molecule methods
Sub-nanosecond processes
X-ray crystallography

GenomicsComputational analysis
Expression analysis
General genomics expertise
High-throughput genome technology
Mapping and sequencing
Proteomics

Macromolecular assemblies & machinesMicrotubules & microtubule associated proteins
Multi/large enzyme complexes
Muscle & muscle proteins (actin/myosin/tropomyosin/acrosomal bundle)
Organelles
Other macromolecules: amyloid fibres
Other macromolecules: chromatin
Other macromolecules: clathrin & endosomes
Other macromolecules: intermediate filaments
Other macromolecules: pili
Other molecular machines: bacterial cell division
Other molecular machines: bacterial flagella
Other molecular machines: chaperones
Other molecular machines: DNA packaging
Other molecular machines: nuclear pore complex
Other molecular machines: ribosome
Other molecular machines: splicing machinery
Rotary machines (ATP synthases, RNA & DNA helicases & other hexameric machines involved in DNA packaging)
Viruses

Medical geneticsComplex & simple gene mapping
Gene therapy
Genetic basis of diseases
Pre-/post-natal diagnosis

Membrane proteins & energy transductionABC transporters
ATP synthases (F & V type)
Beta-barrel membrane proteins
G-protein coupled receptors & archaebacterial retinal-binding proteins
Ion channels & gating: ligand-gated ion channels, voltage-gated ion channels
Other channels (water, mechanosensitive, etc.)
Photosynthetic membrane proteins
Protein translocases
P-type ATPases
Respiratory chain complexes
Secondary transporters
Transporters in mitochondria, including uncoupling proteins

Microbial evolution & genomicsBacterial comparative genomics
Evolution
Genetic/phenotypic diversity of bacteria, parasites & fungi
Microbial genetics
Phylogeny
Virus evolution

Plant genomes & evolutionEvolution of developmental genes & morphology
Genome evolution
Genomics
Organelle genomes
Phylogeny of genes
Phylogeny of taxa
Transposons

Protein foldingAb initio protein structure prediction
Analysis & classification of protein folding patterns
Computational models of protein folding
Folding & assembly of membrane protein complexes
Mechanisms of protein folding & unfolding reactions
Role of extrinsic factors in protein folding reactions
Statistical mechanics of protein folding
Structural & dynamical analyses of partially folded proteins (e.g. molten globules & unfolded states)
Thermodynamic properties of folded proteins

Structural genomicsCrystallization & structure determination by x-ray crystallography
Database infrastructure
Functional annotation of protein structures
NMR spectroscopy: protein structures & innovations in HTP methods
Protein production (cloning, expression, purification, biochemical characterization)
Protein sequence & structure comparisons/families
Target selection

Structure: RNAAptamers & riboswitches
Cation & water interactions
Cruciforms & junctions
Crystal structures of RNA
Drug-DNA complexes
Dynamics & energetics
Nucleic acid NMR
Ribosome structural biology
Ribozymes
RNA enzymology
RNA folding
RNPS
tRNA

Structure: replication & repairDNA Damage
DNA Damage signalling, checkpoints
DNA glycosylases
DNA ligases
DNA polymerases
DNA Recognition
Enzymatic activities
Helicases
Nucleases
Recombination proteins
Single-strand Binding
Topoisomerases

Structure: transcription & translationChromatin-modifying enzymes
DNA structure
DNA-modifying enzymes
mRNA processing
Nucleosomes & chromatin
Ribosomes
RNA polymerases
SRP & translocons
Transcription factors
Transcriptional regulators
tRNA synthetases

Theory & simulationComputer simulations
Electrostatic interactions
Folding
Free-energy changes & properties
Quantum chemistry
Structure prediction
Supramolecular structures
Water & aqueous solutions



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