A.B. ''67, Harvard College; Ph.D. ''72, Columbia University; postdoc ''73-''74, University of California, Berkeley; Professor of Chemistry and of Pediatrics, University of Rochester

Predicting structures and stabilities for H-type pseudoknots with interhelix loops. Cao S, Chen SJ RNA 2009 Apr 15(4):696-706 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Aaron Burton and Niles Lehman / Douglas Turner Evaluated 24 Jun 2009 Accurate SHAPE-directed RNA structure determination. Deigan KE, Li TW, Mathews DH, Weeks KM Proc Natl Acad Sci U S A 2009 Jan 6 106(1):97-102 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 29 Jan 2009 High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. Wilkinson KA, Gorelick RJ, …, Giddings MC, Weeks KM PLoS Biol 2008 Apr 29 6(4):e96 [abstract on PubMed] [related articles] [FREE full text] Selected by | Anne-Catherine Dock-Bregeon / Douglas Turner Evaluated 27 Oct 2008 Crystal structure of a self-spliced group II intron. Toor N, Keating KS, Taylor SD, Pyle AM Science 2008 Apr 4 320(5872):77-82 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Robert Batey / Douglas Turner Evaluated 14 Jul 2008 The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Parisien M, Major F Nature 2008 Mar 6 452(7183):51-5 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner / Gabriele Varani / Pascale Legault Evaluated 19 Mar 2008 Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Lécuyer E, Yoshida H, …, Tomancak P, Krause HM Cell 2007 Oct 5 131(1):174-87 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Talila Volk / Ken Irvine / Michael Sendtner / Elizabeth Gavis / Roy Long / Paul Lasko / Douglas Turner Evaluated 10 Mar 2008 RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). Richardson JS, Schneider B, …, Berman HM, RNA Ontology Consortium RNA 2008 Mar 14(3):465-81 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 6 Mar 2008 A conformationally restricted guanosine analog reveals the catalytic relevance of three structures of an RNA enzyme. Yajima R, Proctor DJ, …, Kierzek E, Bevilacqua PC Chem Biol 2007 Jan 14(1):23-30 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 7 Dec 2007 Automated de novo prediction of native-like RNA tertiary structures. Das R, Baker D Proc Natl Acad Sci U S A 2007 Sep 11 104(37):14664-9 [abstract on PubMed] [related articles] [FREE full text] Selected by | Tamar Schlick / Tobin Sosnick / Douglas Turner Evaluated 7 Dec 2007 A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. Mortimer SA, Weeks KM J Am Chem Soc 2007 Apr 11 129(14):4144-5 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Robert Batey / Douglas Turner Evaluated 23 Apr 2007 The structural basis of ribozyme-catalyzed RNA assembly. Robertson MP, Scott WG Science 2007 Mar 16 315(5818):1549-53 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Robert Batey / Thorsten Dieckmann / Burckhard Seelig / Michael Yarus / Douglas Turner Evaluated 12 Apr 2007 Structural basis for ribosome recruitment and manipulation by a viral IRES RNA. Pfingsten JS, Costantino DA, Kieft JS Science 2006 Dec 1 314(5804):1450-4 [abstract on PubMed] [related articles] [FREE full text] Selected by | Robert Batey / Douglas Turner / Daniel Gallie Evaluated 5 Jan 2007 Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. Uzilov AV, Keegan JM, Mathews DH BMC Bioinformatics 2006-01-01 7:173 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner Evaluated 31 Oct 2006 Structural evidence for a two-metal-ion mechanism of group I intron splicing. Stahley MR, Strobel SA Science 2005 Sep 2 309(5740):1587-90 [abstract on PubMed] [related articles] [FREE full text] Selected by | Janet Morrow / Douglas Turner Evaluated 24 Jan 2006 Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Washietl S, Hofacker IL, …, Hüttenhofer A, Stadler PF Nat Biotechnol 2005 Nov 23(11):1383-90 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 23 Jan 2006 Crystal structure of the RNA component of bacterial ribonuclease P. Torres-Larios A, Swinger KK, …, Pan T, Mondragón A Nature 2005 Sep 22 437(7058):584-7 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 19 Oct 2005 Crystal structure of a bacterial ribonuclease P RNA. Kazantsev AV, Krivenko AA, …, Adams PD, Pace NR Proc Natl Acad Sci U S A 2005 Sep 20 102(38):13392-7 [abstract on PubMed] [related articles] [FREE full text] Selected by | Kathleen Hall / Douglas Turner Evaluated 19 Oct 2005 RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble. Ding Y, Chan CY, Lawrence CE RNA 2005 Aug 11(8):1157-66 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner Evaluated 4 Aug 2005 RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM J Am Chem Soc 2005 Mar 30 127(12):4223-31 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 31 Mar 2005 Basis for structural diversity in homologous RNAs. Krasilnikov AS, Xiao Y, Pan T, Mondragón A Science 2004 Oct 1 306(5693):104-7 [abstract on PubMed] [related articles] [FREE full text] Selected by | David M.J. Lilley / Gabriele Varani / Douglas Turner Evaluated 1 Dec 2004 Crystal structure of a self-splicing group I intron with both exons. Adams PL, Stahley MR, …, Wang J, Strobel SA Nature 2004 Jul 1 430(6995):45-50 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner / David M.J. Lilley Evaluated 9 Jul 2004 Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA. Chamberlin SI, Weeks KM Biochemistry 2003 Feb 4 42(4):901-9 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Douglas Turner Evaluated 21 May 2004 A statistical sampling algorithm for RNA secondary structure prediction. Ding Y, Lawrence CE Nucleic Acids Res 2003 Dec 15 31(24):7280-301 [abstract on PubMed] [related articles] [FREE full text] Selected by | Eric Westhof / Douglas Turner Evaluated 19 Feb 2004 NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site. Hoffmann B, Mitchell GT, …, Collins RA, Legault P Proc Natl Acad Sci U S A 2003 Jun 10 100(12):7003-8 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner Evaluated 19 Sep 2003 Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex. Lynch SR, Gonzalez RL, Puglisi JD Structure 2003 Jan 11(1):43-53 [abstract on PubMed] [related articles] [order article] Selected by | Thorsten Dieckmann / Douglas Turner Evaluated 6 Aug 2003 Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA. Theimer CA, Finger LD, Trantirek L, Feigon J Proc Natl Acad Sci U S A 2003 Jan 21 100(2):449-54 [abstract on PubMed] [related articles] [FREE full text] Selected by | Samuel Butcher / Douglas Turner Evaluated 31 Jul 2003 Crystal structure of the specificity domain of ribonuclease P. Krasilnikov AS, Yang X, Pan T, Mondragón A Nature 2003 Feb 13 421(6924):760-4 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Peter Qin / David M.J. Lilley / Oliver Weichenrieder / Gabriele Varani / Douglas Turner Evaluated 31 Jul 2003 The crystal structure of a 26-nucleotide RNA containing a hook-turn. Szép S, Wang J, Moore PB RNA 2003 Jan 9(1):44-51 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner Evaluated 17 Jan 2003 Specificity of RNA-RNA helix recognition. Battle DJ, Doudna JA Proc Natl Acad Sci U S A 2002 Sep 3 99(18):11676-81 [abstract on PubMed] [related articles] [FREE full text] Selected by | Scott K Silverman / Thorsten Dieckmann / Peter Qin / Douglas Turner Evaluated 18 Nov 2002 The non-Watson-Crick base pairs and their associated isostericity matrices. Leontis NB, Stombaugh J, Westhof E Nucleic Acids Res 2002 Aug 15 30(16):3497-531 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner / Evelyn Jabri Evaluated 13 Sep 2002 NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling. Kim I, Lukavsky PJ, Puglisi JD J Am Chem Soc 2002 Aug 14 124(32):9338-9 [abstract on PubMed] [related articles] [order article] Selected by | Douglas Turner / Thorsten Dieckmann / Peter Sarnow Evaluated 27 Aug 2002 Effects of magnesium ions on the stabilization of RNA oligomers of defined structures. Serra MJ, Baird JD, …, Retatagos K, Westhof E RNA 2002 Mar 8(3):307-23 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner Evaluated 28 May 2002 Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. Cromsigt JA, Hilbers CW, Wijmenga SS J Biomol NMR 2001 Sep 21(1):11-29 [abstract on PubMed] [related articles] [order article] Selected by | Douglas Turner Evaluated 2 Jan 2002 RNAMotif, an RNA secondary structure definition and search algorithm. Macke TJ, Ecker DJ, …, Case DA, Sampath R Nucleic Acids Res 2001 Nov 15 29(22):4724-35 [abstract on PubMed] [related articles] [FREE full text] Selected by | Douglas Turner / Tina Henkin Evaluated 2 Jan 2002

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