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Arlen Johnson
Department of Molecular Genetics and Microbiology, University of Texas at Austin, Austin, United States of America

Faculty Member: Cell Biology > Control of Gene Expression [ since 25 July 2001 ]
[ Evaluations ]
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Evaluations

Misfolded proteins partition between two distinct quality control compartments.
Kaganovich D, Kopito R, Frydman J
Nature 2008 Aug 28 454(7208):1088-95 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson
Evaluated 2 Sep 2008

Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease.
Kraft C, Deplazes A, Sohrmann M, Peter M
Nat Cell Biol 2008 May 10(5):602-10 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson
Evaluated 13 May 2008

Functional specificity among ribosomal proteins regulates gene expression.
Komili S, Farny NG, Roth FP, Silver PA
Cell 2007 Nov 2 131(3):557-71 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Christopher Nicchitta / Arlen Johnson / Jeff Coller
Evaluated 26 Nov 2007

Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Liu Q, Greimann JC, Lima CD
Cell 2006 Dec 15 127(6):1223-37 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Megerditch Kiledjian / Elena Conti / Arlen Johnson
Evaluated 11 Apr 2007

A late-acting quality control process for mature eukaryotic rRNAs.
LaRiviere FJ, Cole SE, Ferullo DJ, Moore MJ
Mol Cell 2006 Nov 17 24(4):619-26 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson
Evaluated 8 Dec 2006

Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit.
Schäfer T, Maco B, …, Aebi U, Hurt E
Nature 2006 Jun 1 441(7093):651-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jonathan R. Warner / Arlen Johnson
Evaluated 17 Aug 2006

Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
Tu BP, Kudlicki A, Rowicka M, McKnight SL
Science 2005 Nov 18 310(5751):1152-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ruma Banerjee / Carl Thummel / Jurg Bahler / Arlen Johnson
Evaluated 17 Jan 2006

Stress granules and processing bodies are dynamically linked sites of mRNP remodeling.
Kedersha N, Stoecklin G, …, Golan DE, Anderson P
J Cell Biol 2005 Jun 20 169(6):871-84 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson
Evaluated 14 Jul 2005

Uncharged tRNA and sensing of amino acid deficiency in mammalian piriform cortex.
Hao S, Sharp JW, …, Koehnle TJ, Gietzen DW
Science 2005 Mar 18 307(5716):1776-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson
Evaluated 8 Apr 2005

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
Kim M, Krogan NJ, …, Greenblatt JF, Buratowski S
Nature 2004 Nov 25 432(7016):517-22 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson / Daniel Reines / Francesc Posas
Evaluated 7 Dec 2004

Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.
West S, Gromak N, Proudfoot NJ
Nature 2004 Nov 25 432(7016):522-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson / Richard Maraia
Evaluated 7 Dec 2004

Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination.
Teixeira A, Tahiri-Alaoui A, …, Proudfoot NJ, Akoulitchev A
Nature 2004 Nov 25 432(7016):526-30 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson / Miles Wilkinson
Evaluated 3 Dec 2004

The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast.
Léger-Silvestre I, Milkereit P, …, Gas N, Gleizes PE
EMBO J 2004 Jun 16 23(12):2336-47 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson
Evaluated 21 Sep 2004

Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM.
Sengupta J, Nilsson J, …, Nissen P, Frank J
Nat Struct Mol Biol 2004 Oct 11(10):957-62 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson
Evaluated 21 Sep 2004

Poly(A)-binding-protein-mediated regulation of hDcp2 decapping in vitro.
Khanna R, Kiledjian M
EMBO J 2004 May 5 23(9):1968-76 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson
Evaluated 30 Apr 2004

A 3' exonuclease that specifically interacts with the 3' end of histone mRNA.
Dominski Z, Yang XC, …, Dadlez M, Marzluff WF
Mol Cell 2003 Aug 12(2):295-305 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson / Megerditch Kiledjian
Evaluated 24 Nov 2003

RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli.
Lee K, Zhan X, …, Cohen SN, Georgiou G
Cell 2003 Sep 5 114(5):623-34 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson / Tracy Palmer
Evaluated 8 Sep 2003

Rapid deadenylation triggered by a nonsense codon precedes decay of the RNA body in a mammalian cytoplasmic nonsense-mediated decay pathway.
Chen CY, Shyu AB
Mol Cell Biol 2003 Jul 23(14):4805-13 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson / Elmar Wahle / Megerditch Kiledjian
Evaluated 22 Jul 2003

Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.
Sheth U, Parker R
Science 2003 May 2 300(5620):805-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Elmar Wahle / Roy Long / Arlen Johnson / Daniel Gallie
Evaluated 19 May 2003

Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay.
Lykke-Andersen J
Mol Cell Biol 2002 Dec 22(23):8114-21 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Miles Wilkinson / Arlen Johnson
Evaluated 11 Feb 2003

Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures.
van Dijk E, Cougot N, …, Wahle E, Séraphin B
EMBO J 2002 Dec 16 21(24):6915-24 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson
Evaluated 11 Feb 2003

The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila.
Andrulis ED, Werner J, …, Tempst P, Lis JT
Nature 2002 Dec 19-26 420(6917):837-41 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Arlen Johnson / Carl Thummel / Jonathan R. Warner / David Tollervey
Evaluated 7 Jan 2003

90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Grandi P, Rybin V, …, Gavin AC, Hurt E
Mol Cell 2002 Jul 10(1):105-15 [abstract on PubMed] [related articles] [order article]
Selected by | Witold Filipowicz / Arlen Johnson
Evaluated 15 Oct 2002

Noc3p, a bHLH protein, plays an integral role in the initiation of DNA replication in budding yeast.
Zhang Y, Yu Z, Fu X, Liang C
Cell 2002 Jun 28 109(7):849-60 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson
Evaluated 1 Jul 2002

Yph1p, an ORC-interacting protein: potential links between cell proliferation control, DNA replication, and ribosome biogenesis.
Du YC, Stillman B
Cell 2002 Jun 28 109(7):835-48 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson
Evaluated 1 Jul 2002

Stop codons affect 5' splice site selection by surveillance of splicing.
Li B, Wachtel C, …, Sperling R, Sperling J
Proc Natl Acad Sci U S A 2002 Apr 16 99(8):5277-82 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Lynne Maquat / Arlen Johnson / Miles Wilkinson
Evaluated 17 Jun 2002

Exosome-mediated recognition and degradation of mRNAs lacking a termination codon.
van Hoof A, Frischmeyer PA, Dietz HC, Parker R
Science 2002 Mar 22 295(5563):2262-4 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Lynne Maquat / Roy Long / Arlen Johnson
Evaluated 30 Apr 2002

An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.
Frischmeyer PA, van Hoof A, …, Parker R, Dietz HC
Science 2002 Mar 22 295(5563):2258-61 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Lynne Maquat / Roy Long / Arlen Johnson
Evaluated 30 Apr 2002

Functional link between the mammalian exosome and mRNA decapping.
Wang Z, Kiledjian M
Cell 2001 Dec 14 107(6):751-62 [abstract on PubMed] [related articles] [order article]
Selected by | Haifan Lin / Arlen Johnson
Evaluated 4 Mar 2002

The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements.
Mukherjee D, Gao M, …, Lutz CS, Wilusz J
EMBO J 2002 Jan 15 21(1-2):165-74 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arlen Johnson
Evaluated 4 Mar 2002

AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.
Chen CY, Gherzi R, …, Mann M, Karin M
Cell 2001 Nov 16 107(4):451-64 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson
Evaluated 4 Mar 2002

The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis.
Senger B, Lafontaine DL, …, Hurt E, Fasiolo F
Mol Cell 2001 Dec 8(6):1363-73 [abstract on PubMed] [related articles] [order article]
Selected by | Elsebet Lund / Witold Filipowicz / Arlen Johnson
Evaluated 11 Feb 2002

Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs.
Tharun S, Parker R
Mol Cell 2001 Nov 8(5):1075-83 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson / Elmar Wahle
Evaluated 20 Dec 2001

Composition and functional characterization of yeast 66S ribosome assembly intermediates.
Harnpicharnchai P, Jakovljevic J, …, Hunt DF, Woolford JL
Mol Cell 2001 Sep 8(3):505-15 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson / Elsebet Lund
Evaluated 22 Nov 2001

Identification of a 60S preribosomal particle that is closely linked to nuclear export.
Bassler J, Grandi P, …, Lechner J, Hurt E
Mol Cell 2001 Sep 8(3):517-29 [abstract on PubMed] [related articles] [order article]
Selected by | Arlen Johnson / Elsebet Lund
Evaluated 22 Nov 2001

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