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Kathleen Hall
Washington University School of Medicine, United States of America

Faculty Member: CELL BIOLOGY > Control of gene expression [ since 26 September 2002 ]
[ Evaluations ]
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Evaluations

Structure of the SAM-II riboswitch bound to S-adenosylmethionine.
Gilbert SD, Rambo RP, Van Tyne D, Batey RT
Nat Struct Mol Biol 2008 Feb 15(2):177-82 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 22 Feb 2008

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures.
Wong TN, Sosnick TR, Pan T
Proc Natl Acad Sci U S A 2007 Nov 13 104(46):17995-8000 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 11 Dec 2007

Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone.
Bhaskaran H, Russell R
Nature 2007 Oct 25 449(7165):1014-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 11 Dec 2007

Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA.
Jin H, Loria JP, Moore PB
Mol Cell 2007 Apr 27 26(2):205-15 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 18 Jun 2007

An antisense RNA inhibits translation by competing with standby ribosomes.
Darfeuille F, Unoson C, Vogel J, Wagner EG
Mol Cell 2007 May 11 26(3):381-92 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 31 May 2007

Structure and interactions of the first three RNA recognition motifs of splicing factor prp24.
Bae E, Reiter NJ, …, Butcher SE, Brow DA
J Mol Biol 2007 Apr 13 367(5):1447-58 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 5 Apr 2007

Identification of a large noncoding RNA in extremophilic eubacteria.
Puerta-Fernandez E, Barrick JE, Roth A, Breaker RR
Proc Natl Acad Sci U S A 2006 Dec 19 103(51):19490-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 26 Jan 2007

Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor.
Skordalakes E, Berger JM
Cell 2006 Nov 3 127(3):553-64 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 23 Nov 2006

Evidence for preorganization of the glmS ribozyme ligand binding pocket.
Hampel KJ, Tinsley MM
Biochemistry 2006 Jun 27 45(25):7861-71 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Robert Batey / Kathleen Hall
Evaluated 1 Sep 2006

Structure of the two most C-terminal RNA recognition motifs of PTB using segmental isotope labeling.
Vitali F, Henning A, …, Erat M, Allain FH
EMBO J 2006 Jan 11 25(1):150-62 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 1 Sep 2006

Atom-by-atom analysis of global downhill protein folding.
Sadqi M, Fushman D, Muñoz V
Nature 2006 Jul 20 442(7100):317-21 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | John Ladbury / Kathleen Hall / Angel Garcia
Evaluated 31 Aug 2006

Pulling on the nascent RNA during transcription does not alter kinetics of elongation or ubiquitous pausing.
Dalal RV, Larson MH, …, Landick R, Block SM
Mol Cell 2006 Jul 21 23(2):231-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 31 Aug 2006

Interaction of the intrinsically unstructured phage lambda N Protein with Escherichia coli NusA.
Prasch S, Schwarz S, …, Schweimer K, Rösch P
Biochemistry 2006 Apr 11 45(14):4542-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 4 May 2006

Mg2+-induced compaction of single RNA molecules monitored by tethered particle microscopy.
Newby Lambert M, Vöcker E, …, Meiners JC, Walter NG
Biophys J 2006 May 15 90(10):3672-85 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 4 May 2006

MicroRNAs direct rapid deadenylation of mRNA.
Wu L, Fan J, Belasco JG
Proc Natl Acad Sci U S A 2006 Mar 14 103(11):4034-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jeff Coller / Megerditch Kiledjian / Kevin J. Luebke / Elsebet Lund / Vishvanath Nene / Kathleen Hall
Evaluated 4 May 2006

Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions.
Roth A, Nahvi A, …, Jona I, Breaker RR
RNA 2006 Apr 12(4):607-19 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Niles Lehman / Kathleen Hall / David M.J. Lilley
Evaluated 2 May 2006

The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase.
Fuchs RT, Grundy FJ, Henkin TM
Nat Struct Mol Biol 2006 Mar 13(3):226-33 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rowena Matthews / Kathleen Hall
Evaluated 7 Apr 2006

Solution structure of the Vts1 SAM domain in the presence of RNA.
Edwards TA, Butterwick JA, …, Palmer AG, Aggarwal AK
J Mol Biol 2006 Mar 10 356(5):1065-72 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 27 Jan 2006

RNA-mediated interaction between the peptide-binding and GTPase domains of the signal recognition particle.
Spanggord RJ, Siu F, Ke A, Doudna JA
Nat Struct Mol Biol 2005 Dec 12(12):1116-22 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 8 Dec 2005

Dual modes of RNA-silencing suppression by Flock House virus protein B2.
Chao JA, Lee JH, …, Schneemann A, Williamson JR
Nat Struct Mol Biol 2005 Nov 12(11):952-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 27 Oct 2005

Crystal structure of a bacterial ribonuclease P RNA.
Kazantsev AV, Krivenko AA, …, Adams PD, Pace NR
Proc Natl Acad Sci U S A 2005 Sep 20 102(38):13392-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall / Douglas Turner
Evaluated 29 Sep 2005

Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing.
Macbeth MR, Schubert HL, …, Hill CP, Bass BL
Science 2005 Sep 2 309(5740):1534-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wen-hong Li / Barry Stoddard / Kathleen Hall / Susan Wente / Gloria Culver / Song Tan
Evaluated 16 Sep 2005

Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA.
Elias Y, Huang RH
Biochemistry 2005 Sep 13 44(36):12057-65 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 16 Sep 2005

Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element.
Staple DW, Butcher SE
J Mol Biol 2005 Jun 24 349(5):1011-23 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 9 Jun 2005

MicroRNAs regulate brain morphogenesis in zebrafish.
Giraldez AJ, Cinalli RM, …, Bartel DP, Schier AF
Science 2005 May 6 308(5723):833-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Oliver Hobert / Kathleen Hall / Lilianna Solnica-Krezel / Sharon Amacher / Ali H. Brivanlou
Evaluated 13 May 2005

A highly conserved 6S RNA structure is required for regulation of transcription.
Trotochaud AE, Wassarman KM
Nat Struct Mol Biol 2005 Apr 12(4):313-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 9 May 2005

Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis.
McElheny D, Schnell JR, …, Dyson HJ, Wright PE
Proc Natl Acad Sci U S A 2005 Apr 5 102(14):5032-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 9 May 2005

Exon repression by polypyrimidine tract binding protein.
Amir-Ahmady B, Boutz PL, …, Phillips ML, Black DL
RNA 2005 May 11(5):699-716 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 6 May 2005

mRNA helicase activity of the ribosome.
Takyar S, Hickerson RP, Noller HF
Cell 2005 Jan 14 120(1):49-58 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall / Gloria Culver / Richard Gourse / Reinhard Luehrmann
Evaluated 24 Jan 2005

Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity.
Parker JS, Roe SM, Barford D
EMBO J 2004 Dec 8 23(24):4727-37 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 22 Dec 2004

Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha.
Zeng Y, Yi R, Cullen BR
EMBO J 2005 Jan 12 24(1):138-48 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 21 Dec 2004

tRNA selection and kinetic proofreading in translation.
Blanchard SC, Gonzalez RL, …, Chu S, Puglisi JD
Nat Struct Mol Biol 2004 Oct 11(10):1008-14 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 11 Oct 2004

Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses.
Du Z, Yu J, …, Andino R, James TL
Biochemistry 2004 Sep 28 43(38):11959-72 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 28 Sep 2004

Crystal structure of Argonaute and its implications for RISC slicer activity.
Song JJ, Smith SK, Hannon GJ, Joshua-Tor L
Science 2004 Sep 3 305(5689):1434-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Richard Carthew / Phillip Zamore / Kathleen Hall
Evaluated 22 Sep 2004

Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces.
Schubert M, Edge RE, …, Mackie GA, McIntosh LP
J Mol Biol 2004 Jul 30 341(1):37-54 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 21 Sep 2004

Structure and RNA interactions of the N-terminal RRM domains of PTB.
Simpson PJ, Monie TP, …, Curry S, Matthews S
Structure 2004 Sep 12(9):1631-43 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 17 Sep 2004

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit.
Klein DJ, Moore PB, Steitz TA
J Mol Biol 2004 Jun 25 340(1):141-77 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Poul Nissen / Kathleen Hall
Evaluated 6 Jul 2004

Multiple time scale backbone dynamics of homologous thermophilic and mesophilic ribonuclease HI enzymes.
Butterwick JA, Patrick Loria J, …, Rance M, Palmer AG
J Mol Biol 2004 Jun 11 339(4):855-71 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | H Jane Dyson / Kathleen Hall
Evaluated 2 Jul 2004

Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome.
Mulder FA, Bouakaz L, …, Akke M, Sanyal S
Biochemistry 2004 May 25 43(20):5930-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 24 May 2004

Assembly of an active group II intron-maturase complex by protein dimerization.
Rambo RP, Doudna JA
Biochemistry 2004 Jun 1 43(21):6486-97 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 24 May 2004

Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif.
Sigel RK, Sashital DG, …, Butcher SE, Pyle AM
Nat Struct Mol Biol 2004 Feb 11(2):187-92 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kathleen Hall
Evaluated 15 Mar 2004

Crystal structure of the complete core of archaeal signal recognition particle and implications for interdomain communication.
Rosendal KR, Wild K, Montoya G, Sinning I
Proc Natl Acad Sci U S A 2003 Dec 9 100(25):14701-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Elena Conti / Kathleen Hall
Evaluated 3 Feb 2004

Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA.
Xu YZ, Newnham CM, …, Konarska MM, Query CC
EMBO J 2004 Jan 28 23(2):376-85 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall / Reinhard Luehrmann
Evaluated 3 Feb 2004

Solution structures of stem-loop RNAs that bind to the two N-terminal RNA-binding domains of nucleolin.
Finger LD, Trantirek L, Johansson C, Feigon J
Nucleic Acids Res 2003 Nov 15 31(22):6461-72 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kathleen Hall
Evaluated 9 Dec 2003

The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme.
Das R, Kwok LW, …, Pollack L, Herschlag D
J Mol Biol 2003 Sep 12 332(2):311-9 [abstract on PubMed] [related articles] [order article]
Selected by | Kathleen Hall
Evaluated 5 Sep 2003

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