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Julin Maloof
Department of Plant Biology, University of California, Davis, Davis, United States of America

Faculty Member: Plant Biology > Plant Genetics & Gene Expression [ since 2 March 2004 ]
[ Evaluations ]
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Evaluations

PEP1 regulates perennial flowering in Arabis alpina.
Wang R, Farrona S, …, Coupland G, Albani MC
Nature 2009 Apr 15 [abstract on PubMed] [related articles] [full text]
Selected by | José M Jiménez-Gómez and Julin Maloof / Ilha Lee
Evaluated 7 May 2009

Effects of genetic perturbation on seasonal life history plasticity.
Wilczek AM, Roe JL, …, Welch SM, Schmitt J
Science 2009 Feb 13 323(5916):930-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Akiko Satake
Evaluated 18 Feb 2009

The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.
James AB, Monreal JA, …, Jenkins GI, Nimmo HG
Science 2008 Dec 19 322(5909):1832-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Elsebeth Kolmos and Seth J Davis / Jose M Jimenez-Gomez and Julin Maloof / Anjali Iyer-Pascuzzi and Philip Benfey
Evaluated 6 Feb 2009

Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana.
Bikard D, Patel D, …, Bennett MJ, Loudet O
Science 2009 Jan 30 323(5914):623-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Deborah Charlesworth / Yves Van de Peer / Mohamed Noor
Evaluated 5 Feb 2009

Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica.
Rumpho ME, Worful JM, …, Moustafa A, Manhart JR
Proc Natl Acad Sci U S A 2008 Nov 18 105(46):17867-71 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Anthony Zera / C. Graham Clark / H Ekkehard Neuhaus / Julin Maloof
Evaluated 11 Dec 2008

Species-specific transcription in mice carrying human chromosome 21.
Wilson MD, Barbosa-Morais NL, …, Tavaré S, Odom DT
Science 2008 Oct 17 322(5900):434-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Yoav Gilad / Kenneth Zaret / Deyou Zheng / Jose M. Jimenez-Gomez and Julin Maloof / Reza Kalhor and Lin Chen / Evi Soutoglou and Tom Misteli / Heng Zhu
Evaluated 10 Nov 2008

Sequencing of natural strains of Arabidopsis thaliana with short reads.
Ossowski S, Schneeberger K, …, Warthmann N, Weigel D
Genome Res 2008 Oct 29 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Bernd Weisshaar / Jose M. Jimenez-Gomez and Julin Maloof
Evaluated 10 Nov 2008

The leaf ionome as a multivariable system to detect a plant's physiological status.
Baxter IR, Vitek O, …, Guerinot ML, Salt DE
Proc Natl Acad Sci U S A 2008 Aug 19 105(33):12081-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 2 Sep 2008

Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication.
Cong B, Barrero LS, Tanksley SD
Nat Genet 2008 Jun 40(6):800-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Michael Lenhard / David Smyth
Evaluated 28 May 2008

Flowering as a condition for xylem expansion in Arabidopsis hypocotyl and root.
Sibout R, Plantegenet S, Hardtke CS
Curr Biol 2008 Mar 25 18(6):458-63 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Elena Alvarez-Buylla
Evaluated 3 Apr 2008

Low levels of polymorphism in genes that control the activation of defense response in Arabidopsis thaliana.
Bakker EG, Traw MB, …, Kreitman ME, Bergelson J
Genetics 2008 Feb 1 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 22 Feb 2008

Mechanistic duality of transcription factor function in phytochrome signaling.
Al-Sady B, Kikis EA, Monte E, Quail PH
Proc Natl Acad Sci U S A 2008 Feb 12 105(6):2232-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 19 Feb 2008

A molecular framework for light and gibberellin control of cell elongation.
de Lucas M, Davière JM, …, Titarenko E, Prat S
Nature 2008 Jan 24 451(7177):480-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Tai-ping Sun
Evaluated 30 Jan 2008

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.
Feng S, Martinez C, …, Fan LM, Deng XW
Nature 2008 Jan 24 451(7177):475-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Vivian Irish / Tai-ping Sun
Evaluated 30 Jan 2008

Light-quality regulation of freezing tolerance in Arabidopsis thaliana.
Franklin KA, Whitelam GC
Nat Genet 2007 Nov 39(11):1410-3 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Xing Wang Deng
Evaluated 13 Nov 2007

ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light.
Kim WY, Fujiwara S, …, Nam HG, Somers DE
Nature 2007 Sep 20 449(7160):356-60 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | C. Robertson McClung / Julin Maloof / Judy Callis
Evaluated 9 Oct 2007

MSQT for choosing SNP assays from multiple DNA alignments.
Warthmann N, Fitz J, Weigel D
Bioinformatics 2007 Oct 15 23(20):2784-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 9 Oct 2007

Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.
Salvi S, Sponza G, …, Phillips RL, Tuberosa R
Proc Natl Acad Sci U S A 2007 Jul 3 104(27):11376-81 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 13 Aug 2007

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.
Clark RM, Schweikert G, …, Ecker JR, Weigel D
Science 2007 Jul 20 317(5836):338-42 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Andy Maule / Jonathan Howard / Thomas Mitchell-Olds
Evaluated 27 Jul 2007

Export of FT protein from phloem companion cells is sufficient for floral induction in Arabidopsis.
Mathieu J, Warthmann N, Küttner F, Schmid M
Curr Biol 2007 Jun 19 17(12):1055-60 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 27 Jul 2007

Phytochrome coordinates Arabidopsis shoot and root development.
Salisbury FJ, Hall A, Grierson CS, Halliday KJ
Plant J 2007 May 50(3):429-38 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 9 Jul 2007

Auxin, actin and growth of the Arabidopsis thaliana primary root.
Rahman A, Bannigan A, …, Blancaflor EB, Baskin TI
Plant J 2007 May 50(3):514-28 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Patrick Masson / Julin Maloof
Evaluated 7 Jun 2007

DELLA protein function in growth responses to canopy signals.
Djakovic-Petrovic T, de Wit M, Voesenek LA, Pierik R
Plant J 2007 Jul 51(1):117-26 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 16 May 2007

The epidermis both drives and restricts plant shoot growth.
Savaldi-Goldstein S, Peto C, Chory J
Nature 2007 Mar 8 446(7132):199-202 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Gwyneth Ingram / Julin Maloof / Daniel Chamovitz / Emmanuel Liscum
Evaluated 13 Mar 2007

PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis.
Shin J, Park E, Choi G
Plant J 2007 Mar 49(6):981-94 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 8 Mar 2007

DELLAs contribute to plant photomorphogenesis.
Achard P, Liao L, …, Fu X, Harberd NP
Plant Physiol 2007 Mar 143(3):1163-72 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 13 Feb 2007

Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis.
Rus A, Baxter I, …, Yakubova E, Salt DE
PLoS Genet 2006 Dec 1 2(12):e210 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Christian Hardtke / Mary Lou Guerinot / Julin Maloof
Evaluated 3 Jan 2007

Overdominant quantitative trait loci for yield and fitness in tomato.
Semel Y, Nissenbaum J, …, Gur A, Zamir D
Proc Natl Acad Sci U S A 2006-08-29 103(35):12981-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 22 Nov 2006

Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis.
Bentsink L, Jowett J, Hanhart CJ, Koornneef M
Proc Natl Acad Sci U S A 2006 Nov 7 103(45):17042-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 21 Nov 2006

Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation.
Khanna R, Shen Y, …, Hwang YS, Quail PH
Plant Cell 2006 Sep 18(9):2157-71 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 29 Sep 2006

PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.
Lariguet P, Schepens I, …, Liscum E, Fankhauser C
Proc Natl Acad Sci U S A 2006 Jun 27 103(26):10134-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 4 Aug 2006

An SNP caused loss of seed shattering during rice domestication.
Konishi S, Izawa T, …, Sasaki T, Yano M
Science 2006 Jun 2 312(5778):1392-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof / Detlef Weigel
Evaluated 9 Jun 2006

A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture.
Clark RM, Wagler TN, Quijada P, Doebley J
Nat Genet 2006 May 38(5):594-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Magnus Nordborg / Miltos Tsiantis
Evaluated 16 May 2006

Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.
Levesque MP, Vernoux T, …, Scheres B, Benfey PN
PLoS Biol 2006 May 4(5):e143 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof / Robert Sablowski
Evaluated 16 May 2006

Association mapping with single-feature polymorphisms.
Kim S, Zhao K, …, Nordborg M, Marjoram P
Genetics 2006 Jun 173(2):1125-33 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 30 Mar 2006

Optimal design and analysis of genetic studies on gene expression.
Fu J, Jansen RC
Genetics 2006 Mar 172(3):1993-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 30 Mar 2006

FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock.
Edwards KD, Anderson PE, …, Smith JQ, Millar AJ
Plant Cell 2006 Mar 18(3):639-50 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 1 Mar 2006

Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice.
Takano M, Inagaki N, …, Hirochika H, Shinomura T
Plant Cell 2005 Dec 17(12):3311-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 22 Feb 2006

Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.
Hiltbrunner A, Viczián A, …, Fankhauser C, Schäfer E
Curr Biol 2005 Dec 6 15(23):2125-30 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Emmanuel Liscum / Julin Maloof
Evaluated 7 Feb 2006

Transcription switches for protoxylem and metaxylem vessel formation.
Kubo M, Udagawa M, …, Fukuda H, Demura T
Genes Dev 2005 Aug 15 19(16):1855-60 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 14 Nov 2005

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.
Cui X, Xu J, …, Roose M, Close TJ
Bioinformatics 2005 Oct 15 21(20):3852-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 9 Nov 2005

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Usadel B, Nagel A, …, Meyer S, Stitt M
Plant Physiol 2005 Jul 138(3):1195-204 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 7 Nov 2005

Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction.
Seoighe C, Gehring C, Hurst LD
PLoS Genet 2005 Aug 1(2):e13 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 1 Sep 2005

Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage.
Dodd AN, Salathia N, …, Millar AJ, Webb AA
Science 2005 Jul 22 309(5734):630-3 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof / Ian Graham / Simon Gilroy
Evaluated 4 Aug 2005

Cytokinin oxidase regulates rice grain production.
Ashikari M, Sakakibara H, …, Kitano H, Matsuoka M
Science 2005 Jul 29 309(5735):741-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | David Jackson / Detlef Weigel / Wolf B. Frommer / Julin Maloof / Elizabeth Kellogg / Richard M. Amasino / Neelima Sinha
Evaluated 4 Aug 2005

A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism.
Schmid KJ, Ramos-Onsins S, …, Weisshaar B, Mitchell-Olds T
Genetics 2005 Mar 169(3):1601-15 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 7 Jun 2005

The pattern of polymorphism in Arabidopsis thaliana.
Nordborg M, Hu TT, …, Kreitman M, Bergelson J
PLoS Biol 2005 Jul 3(7):e196 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof / Elizabeth Kellogg
Evaluated 7 Jun 2005

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis.
Li H, Johnson P, …, Alonso JM, Ecker JR
Dev Cell 2004 Aug 7(2):193-204 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof
Evaluated 31 May 2005

Phototropins promote plant growth in response to blue light in low light environments.
Takemiya A, Inoue S, …, Kinoshita T, Shimazaki K
Plant Cell 2005 Apr 17(4):1120-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 11 May 2005

Epistasis and balanced polymorphism influencing complex trait variation.
Kroymann J, Mitchell-Olds T
Nature 2005 May 5 435(7038):95-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / Seth J Davis
Evaluated 11 May 2005

Mapping quantitative trait loci in multiple populations of Arabidopsis thaliana identifies natural allelic variation for trichome density.
Symonds VV, Godoy AV, …, Casal JJ, Lloyd AM
Genetics 2005 Mar 169(3):1649-58 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 5 Apr 2005

Evolutionary significance of gene expression divergence.
Jordan IK, Mariño-Ramírez L, Koonin EV
Gene 2005 Jan 17 345(1):119-26 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 29 Mar 2005

A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.
Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER
Plant Cell 2004 Nov 16(11):2923-39 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 2 Feb 2005

Heterodimerization of type II phytochromes in Arabidopsis.
Sharrock RA, Clack T
Proc Natl Acad Sci U S A 2004 Aug 3 101(31):11500-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 21 Jan 2005

Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci.
Hagenblad J, Tang C, …, Weigel D, Nordborg M
Genetics 2004 Nov 168(3):1627-38 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 7 Dec 2004

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis.
Liu J, He Y, Amasino R, Chen X
Genes Dev 2004 Dec 1 18(23):2873-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Christian Hardtke / Julin Maloof / Magnus Nordborg
Evaluated 25 Nov 2004

Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.
Huq E, Al-Sady B, …, Apel K, Quail PH
Science 2004 Sep 24 305(5692):1937-41 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 8 Oct 2004

Targeted knockout in Physcomitrella reveals direct actions of phytochrome in the cytoplasm.
Mittmann F, Brücker G, …, Hartmann E, Hughes J
Proc Natl Acad Sci U S A 2004 Sep 21 101(38):13939-44 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Seth J Davis / Julin Maloof
Evaluated 27 Sep 2004

Green light stimulates early stem elongation, antagonizing light-mediated growth inhibition.
Folta KM
Plant Physiol 2004 Jul 135(3):1407-16 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 1 Sep 2004

Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits.
Schön CC, Utz HF, …, Openshaw S, Melchinger AE
Genetics 2004 May 167(1):485-98 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 5 Aug 2004

Detecting selection in noncoding regions of nucleotide sequences.
Wong WS, Nielsen R
Genetics 2004 Jun 167(2):949-58 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 19 Jul 2004

A proteoglycan mediates inductive interaction during plant vascular development.
Motose H, Sugiyama M, Fukuda H
Nature 2004 Jun 24 429(6994):873-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Julin Maloof / David Smyth / Philip Benfey / Julia Kehr / Ian Moore / Paul Dupree / Liam Dolan
Evaluated 30 Jun 2004

Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.
Doi K, Izawa T, …, Yano M, Yoshimura A
Genes Dev 2004 Apr 15 18(8):926-36 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof / Detlef Weigel
Evaluated 1 Jun 2004

FRIGIDA-related genes are required for the winter-annual habit in Arabidopsis.
Michaels SD, Bezerra IC, Amasino RM
Proc Natl Acad Sci U S A 2004 Mar 2 101(9):3281-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 14 Apr 2004

Natural genetic variation in Arabidopsis identifies BREVIS RADIX, a novel regulator of cell proliferation and elongation in the root.
Mouchel CF, Briggs GC, Hardtke CS
Genes Dev 2004 Mar 15 18(6):700-14 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Michael Lenhard / Julin Maloof / Detlef Weigel / Miltos Tsiantis
Evaluated 14 Apr 2004

Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms.
Kramer EM, Jaramillo MA, Di Stilio VS
Genetics 2004 Feb 166(2):1011-23 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julin Maloof
Evaluated 23 Mar 2004

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