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Rafael Zardoya
Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, Madrid, Spain

Faculty Member: Genomics & Genetics > Evolutionary/Comparative Genetics [ since 9 August 2004 ]
[ Evaluations ]
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Evaluations

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches.
Smith SA, Beaulieu JM, Donoghue MJ
BMC Evol Biol 2009 9:37 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Diego San Mauro and Rafael Zardoya
Evaluated 1 Jun 2009

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
Hartmann S, Vision TJ
BMC Evol Biol 2008 8:95 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Diego San Mauro and Rafael Zardoya
Evaluated 19 Mar 2009

Statistical tests between competing hypotheses of Hox cluster evolution.
Lanfear R, Bromham L
Syst Biol 2008 Oct 57(5):708-18 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Diego San Mauro and Rafael Zardoya
Evaluated 18 Dec 2008

The PhyLoTA Browser: processing GenBank for molecular phylogenetics research.
Sanderson MJ, Boss D, …, Cranston KA, Wehe A
Syst Biol 2008 Jun 57(3):335-46 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Diego San Mauro and Rafael Zardoya
Evaluated 22 Sep 2008

A Genealogical Approach to Quantifying Lineage Divergence.
Cummings MP, Neel MC, Shaw KL
Evolution 2008 Aug 5 [abstract on PubMed] [related articles] [full text]
Selected by | Rafael Zardoya
Evaluated 8 Sep 2008

Inverted replication of vertebrate mitochondria.
Fonseca MM, Posada D, Harris DJ
Mol Biol Evol 2008 May 25(5):805-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Diego San Mauro and Rafael Zardoya
Evaluated 11 Aug 2008

Broad phylogenomic sampling improves resolution of the animal tree of life.
Dunn CW, Hejnol A, …, Martindale MQ, Giribet G
Nature 2008 Apr 10 452(7188):745-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Sebastian Shimeld / Rafael Zardoya
Dissenters | Arcady Mushegian
Evaluated 21 Apr 2008


Extensive population genetic structure in the giraffe.
Brown DM, Brenneman RA, …, Jacobs DK, Wayne RK
BMC Biol 2007 5:57 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 10 Apr 2008

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
King N, Westbrook MJ, …, Grigoriev IV, Rokhsar D
Nature 2008 Feb 14 451(7180):783-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Max Telford / Rafael Zardoya / Charles Streuli / Laura Landweber / Joe Heitman
Evaluated 21 Feb 2008

Preserving the evolutionary potential of floras in biodiversity hotspots.
Forest F, Grenyer R, …, Hedderson TA, Savolainen V
Nature 2007 Feb 15 445(7129):757-60 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Anne Magurran / Rafael Zardoya
Evaluated 9 Mar 2007

Axial patterning in cephalochordates and the evolution of the organizer.
Yu JK, Satou Y, …, Bronner-Fraser M, Holland LZ
Nature 2007 Feb 8 445(7128):613-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rafael Zardoya
Evaluated 5 Mar 2007

Analysis of one million base pairs of Neanderthal DNA.
Green RE, Krause J, …, Paunovic M, Pääbo S
Nature 2006 Nov 16 444(7117):330-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rafael Zardoya / Laura Landweber
Evaluated 4 Dec 2006

An RNA gene expressed during cortical development evolved rapidly in humans.
Pollard KS, Salama SR, …, Vanderhaeghen P, Haussler D
Nature 2006 Sep 14 443(7108):167-72 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kevan A. Martin / John Abrams / Deyou Zheng / Andrew Feinberg / Rafael Zardoya / Ali H. Brivanlou / Robert Sapolsky / Gabriele Varani / Christopher A. Walsh
Evaluated 9 Oct 2006


Genetic evidence for complex speciation of humans and chimpanzees.
Patterson N, Richter DJ, …, Lander ES, Reich D
Nature 2006 Jun 29 441(7097):1103-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Joshua Akey / James Fry / Rafael Zardoya / Thomas Mitchell-Olds
Evaluated 25 Jul 2006

Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene.
Prud'homme B, Gompel N, …, True JR, Carroll SB
Nature 2006 Apr 20 440(7087):1050-3 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Patricia Simpson / Rafael Zardoya
Evaluated 5 Jun 2006

Population size does not influence mitochondrial genetic diversity in animals.
Bazin E, Glémin S, Galtier N
Science 2006 Apr 28 312(5773):570-2 [abstract on PubMed] [related articles] [FREE full text]
Selected by | John Jaenike / David Rand / Rafael Zardoya / Richard Frankham / Ary Hoffmann
Evaluated 16 May 2006

Darwinian evolution can follow only very few mutational paths to fitter proteins.
Weinreich DM, Delaney NF, Depristo MA, Hartl DL
Science 2006 Apr 7 312(5770):111-4 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya / Burckhard Seelig / Shelley Copley
Evaluated 25 Apr 2006

Transitions to asexuality result in excess amino acid substitutions.
Paland S, Lynch M
Science 2006 Feb 17 311(5763):990-2 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Joachim Kurtz / Molly Przeworski / Rafael Zardoya
Evaluated 2 Mar 2006

Early evolution of the venom system in lizards and snakes.
Fry BG, Vidal N, …, Summerhayes R, Kochva E
Nature 2006 Feb 2 439(7076):584-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Edmund Brodie / Rafael Zardoya
Evaluated 2 Mar 2006

Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.
Poinar HN, Schwarz C, …, Miller W, Schuster SC
Science 2006 Jan 20 311(5759):392-4 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 30 Jan 2006

Hidden diversity and host specificity in cycliophorans: a phylogeographic analysis along the North Atlantic and Mediterranean Sea.
Obst M, Funch P, Giribet G
Mol Ecol 2005 Dec 14(14):4427-40 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rafael Zardoya
Evaluated 14 Dec 2005

Two rounds of whole genome duplication in the ancestral vertebrate.
Dehal P, Boore JL
PLoS Biol 2005 Oct 3(10):e314 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 11 Oct 2005

Phylogenetic MCMC algorithms are misleading on mixtures of trees.
Mossel E, Vigoda E
Science 2005 Sep 30 309(5744):2207-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 11 Oct 2005

Multiple causes of high extinction risk in large mammal species.
Cardillo M, Mace GM, …, Orme CD, Purvis A
Science 2005 Aug 19 309(5738):1239-41 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Virginia Dale / Rafael Zardoya / Rodolfo Dirzo
Evaluated 7 Oct 2005

Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution.
Lavrov DV, Forget L, Kelly M, Lang BF
Mol Biol Evol 2005 May 22(5):1231-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 7 Jun 2005

DRUIDS--detection of regions with unexpected internal deviation from stationarity.
Fedrigo O, Adams DC, Naylor GJ
J Exp Zoolog B Mol Dev Evol 2005 Mar 15 304(2):119-28 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rafael Zardoya
Evaluated 23 Mar 2005

Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation.
Sullivan J, Abdo Z, Joyce P, Swofford DL
Mol Biol Evol 2005 Jun 22(6):1386-92 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 16 Mar 2005

Worldwide phylogeography of wild boar reveals multiple centers of pig domestication.
Larson G, Dobney K, …, Andersson L, Cooper A
Science 2005 Mar 11 307(5715):1618-21 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya / Andrey Rzhetsky
Evaluated 15 Mar 2005

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.
Posada D, Buckley TR
Syst Biol 2004 Oct 53(5):793-808 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Rafael Zardoya
Evaluated 20 Jan 2005

Partial island submergence and speciation in an adaptive radiation: a multilocus analysis of the Cuban green anoles.
Glor RE, Gifford ME, …, Chamizo Lara AR, Jackman TR
Proc Biol Sci 2004 Nov 7 271(1554):2257-65 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 20 Jan 2005

Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes.
Yokobori S, Fukuda N, …, Aoyama T, Oshima T
Mol Biol Evol 2004 Nov 21(11):2034-46 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Rafael Zardoya
Evaluated 18 Jan 2005

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