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Wolf B. Frommer
Department of Plant Biology, Carnegie Institution, Stanford, United States of America

Head of Section: PLANT BIOLOGY > Plant biochemistry & physiology [ since 13 July 2001 ]
[ Biography ] [ Homepage ] [ Evaluations ]
Biography

Contact details:
Carnegie Institution
Plant Biology
260 Panama Street
Stanford CA 94305
Tel: 650 325 1521 x208
Fax: 650 325 6857
Email: wfrommer@stanford.edu

Research interests:
Transport processes are crucial for cell function. Moreover sensing mechanisms must exist at the plasma membrane to inform the cell about extracellular concentration and composition of solutes in order to be able to adapt transport capacities to the conditions.

Our research focusses on transport across the plasma membrane of plants. Using yeast suppression cloning systems we have been able to identify a large number of different transporters, including three different sucrose transporters, ammonium transporters, two superfamilies of amino acid transporters, two superfamilies of nucleobase transporters including transporters for cytokinins, oligo peptide transporters etc.

Functional studies (e.g. kinetic properties) in combination with localization studies and generation of knock out mutants help understanding the role of the individual proteins in the overall physiology of the plant.

We study the oligomerization of transporters using the split ubiquitin system, blue native electrophoresis and other methods to better understand posttranscriptional regulation.

We search for putative sensors at the plasma membrane that regulate transporter activity and turnover.

To be able to fully understand the transport processes it is crucial to determine the subcellular concentration of solutes, e.g. in the cell wall space versus the cytosol. Novel nanosensors have been developed that allow dynamic analysis of solute concentration in living cells using non-destructive methodology. These will in combination with the knowledge of transporter localization at the cellular and subcellular level provide new insights into the physiology of plants.

This technology also provides a new way of analyzing the physiology of other organisms including animals.

Home page

http://www-ciwdpb.stanford.edu/research/research_frommer.php

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Evaluations

Alternative photosynthetic electron flow to oxygen in marine Synechococcus.
Bailey S, Melis A, …, Shrager J, Grossman A
Biochim Biophys Acta 2008 Mar 1777(3):269-76 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer
Evaluated 4 Feb 2008

The 1.3-A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins.
Lupo D, Li XD, …, Merrick M, Winkler FK
Proc Natl Acad Sci U S A 2007 Dec 4 104(49):19303-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer
Evaluated 27 Nov 2007

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.
Chi A, Huttenhower C, …, Troyanskaya OG, Hunt DF
Proc Natl Acad Sci U S A 2007 Feb 13 104(7):2193-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer
Evaluated 27 Nov 2007

Membrane potential governs lateral segregation of plasma membrane proteins and lipids in yeast.
Grossmann G, Opekarová M, …, Weig-Meckl I, Tanner W
EMBO J 2007 Jan 10 26(1):1-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Ramon Serrano / Wolf B. Frommer / Ken Jacobson
Evaluated 22 Feb 2007

Extracellular ATP in plants. Visualization, localization, and analysis of physiological significance in growth and signaling.
Kim SY, Sivaguru M, Stacey G
Plant Physiol 2006 Nov 142(3):984-92 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Alisdair Fernie / Wolf B. Frommer
Evaluated 16 Feb 2007

Doubled sugar content in sugarcane plants modified to produce a sucrose isomer.
Wu L, Birch RG
Plant Biotechnol J 2007 Jan 5(1):109-17 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | John Patrick / Wolf B. Frommer
Evaluated 16 Feb 2007

A suite of sucrose transporters expressed in coats of developing legume seeds includes novel pH-independent facilitators.
Zhou Y, Qu H, …, Offler CE, Patrick JW
Plant J 2007 Feb 49(4):750-64 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Christiaan van der Schoot / Wolf B. Frommer
Evaluated 16 Feb 2007

A silicon transporter in rice.
Ma JF, Tamai K, …, Murata Y, Yano M
Nature 2006 Mar 30 440(7084):688-91 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolaus Von Wiren / Julian Schroeder / Wolf B. Frommer
Evaluated 29 Nov 2006

Regulatory functions of nuclear hexokinase1 complex in glucose signaling.
Cho YH, Yoo SD, Sheen J
Cell 2006 Nov 3 127(3):579-89 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Sjef Smeekens / Steven Huber / Lee Sweetlove / Wolf B. Frommer / Alisdair Fernie / Erich Grotewold
Evaluated 23 Nov 2006

Structural mechanism of plant aquaporin gating.
Törnroth-Horsefield S, Wang Y, …, Neutze R, Kjellbom P
Nature 439(7077):688-94 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer
Evaluated 7 Nov 2006

STIM is a Ca2+ sensor essential for Ca2+-store-depletion-triggered Ca2+ influx.
Liou J, Kim ML, …, Ferrell JE, Meyer T
Curr Biol 2005 Jul 12 15(13):1235-41 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Roger Hardie / Hilmar Bading / Wolf B. Frommer / Anjana Rao
Evaluated 30 Aug 2005

Cytokinin oxidase regulates rice grain production.
Ashikari M, Sakakibara H, …, Kitano H, Matsuoka M
Science 2005 Jul 29 309(5735):741-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | David Jackson / Detlef Weigel / Wolf B. Frommer / Julin Maloof / Elizabeth Kellogg / Richard M. Amasino / Neelima Sinha
Evaluated 3 Aug 2005

The vacuolar Ca2+-activated channel TPC1 regulates germination and stomatal movement.
Peiter E, Maathuis FJ, …, Hetherington AM, Sanders D
Nature 2005 Mar 17 434(7031):404-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer
Evaluated 3 Aug 2005

The F-box protein TIR1 is an auxin receptor.
Dharmasiri N, Dharmasiri S, Estelle M
Nature 2005 May 26 435(7041):441-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Patrick Masson / Yunde Zhao / Tai-ping Sun / Philip Benfey / Vivian Irish / Wolf B. Frommer / Emmanuel Liscum
Evaluated 2 Aug 2005

The Arabidopsis F-box protein TIR1 is an auxin receptor.
Kepinski S, Leyser O
Nature 2005 May 26 435(7041):446-51 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Patrick Masson / Yunde Zhao / Tai-ping Sun / Philip Benfey / Vivian Irish / Wolf B. Frommer / Seth J Davis / Emmanuel Liscum
Evaluated 2 Aug 2005

Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 A.
Khademi S, O'Connell J, …, Miercke LJ, Stroud RM
Science 2004 Sep 10 305(5690):1587-94 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Tracy Palmer / Ruma Banerjee / Ian Booth / Xiayang Qiu / Wolf B. Frommer
Evaluated 4 Jan 2005

Saccharomyces cerevisiae Aqr1 is an internal-membrane transporter involved in excretion of amino acids.
Velasco I, Tenreiro S, Calderon IL, André B
Eukaryot Cell 2004 Dec 3(6):1492-503 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer / Doris Rentsch
Evaluated 4 Jan 2005

A candidate NAD+ transporter in an intracellular bacterial symbiont related to Chlamydiae.
Haferkamp I, Schmitz-Esser S, …, Horn M, Neuhaus HE
Nature 2004 Dec 2 432(7017):622-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Enrico Martinoia / Wolf B. Frommer
Evaluated 20 Dec 2004

Loss of TIP1;1 aquaporin in Arabidopsis leads to cell and plant death.
Ma S, Quist TM, …, Joly R, Bohnert HJ
Plant J 2004 Dec 40(6):845-59 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer
Evaluated 15 Dec 2004

Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation.
Hwang HH, Gelvin SB
Plant Cell 2004 Nov 16(11):3148-67 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Elizabeth Hood / Wolf B. Frommer
Evaluated 7 Dec 2004

A pancreatic islet-specific microRNA regulates insulin secretion.
Poy MN, Eliasson L, …, Rorsman P, Stoffel M
Nature 2004 Nov 11 432(7014):226-30 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Fritz Eckstein / Oliver Hobert / Chris Sander / Wolf B. Frommer
Evaluated 7 Dec 2004

A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.
Gibon Y, Blaesing OE, …, Selbig J, Stitt M
Plant Cell 2004 Dec 16(12):3304-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolaus Von Wiren / Wolf B. Frommer / Richard Leegood
Evaluated 7 Dec 2004

Analysis of transport activity of Arabidopsis sugar alcohol permease homolog AtPLT5.
Reinders A, Panshyshyn JA, Ward JM
J Biol Chem 2005 Jan 14 280(2):1594-602 [abstract on PubMed] [related articles] [FREE full text]
Selected by | John Patrick / Wolf B. Frommer
Evaluated 7 Dec 2004

Neural activity triggers neuronal oxidative metabolism followed by astrocytic glycolysis.
Kasischke KA, Vishwasrao HD, …, Zipfel WR, Webb WW
Science 2004 Jul 2 305(5680):99-103 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer / Raymond Dingledine
Evaluated 12 Jul 2004

Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer.
Karasawa S, Araki T, …, Mizuno H, Miyawaki A
Biochem J 2004 Jul 1 381(Pt 1):307-12 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer
Evaluated 4 May 2004

Computational design of a Zn2+ receptor that controls bacterial gene expression.
Dwyer MA, Looger LL, Hellinga HW
Proc Natl Acad Sci U S A 2003 Sep 30 100(20):11255-60 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer
Evaluated 3 Nov 2003

Computational design of receptor and sensor proteins with novel functions.
Looger LL, Dwyer MA, Smith JJ, Hellinga HW
Nature 2003 May 8 423(6936):185-90 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wen-hong Li / Rob Russell / Mark Nelson / Wolf B. Frommer
Evaluated 3 Nov 2003

Structure and mechanism of the lactose permease of Escherichia coli.
Abramson J, Smirnova I, …, Kaback HR, Iwata S
Science 2003 Aug 1 301(5633):610-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Stephen White / Wil Konings / David Stokes / Mario Amzel / Tracy Palmer / Jonathan Javitch / Wolf B. Frommer / Petra Fromme / Andreas Engel
Evaluated 1 Sep 2003

Role of a single aquaporin isoform in root water uptake.
Javot H, Lauvergeat V, …, Bouchez D, Maurel C
Plant Cell 2003 Feb 15(2):509-22 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer
Evaluated 24 Mar 2003

Reconstitution in yeast of the Arabidopsis SOS signaling pathway for Na+ homeostasis.
Quintero FJ, Ohta M, …, Zhu JK, Pardo JM
Proc Natl Acad Sci U S A 2002 Jun 25 99(13):9061-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Wolf B. Frommer / Ramon Serrano
Evaluated 3 Jul 2002

An LRR receptor kinase involved in perception of a peptide plant hormone, phytosulfokine.
Matsubayashi Y, Ogawa M, Morita A, Sakagami Y
Science 2002 May 24 296(5572):1470-2 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Sheila McCormick / Wolf B. Frommer / Julia Kehr / Pierre De Wit
Evaluated 5 Jun 2002

Oligomeric state of membrane transport proteins analyzed with blue native electrophoresis and analytical ultracentrifugation.
Heuberger EH, Veenhoff LM, …, Friesen RH, Poolman B
J Mol Biol 2002 Apr 5 317(4):591-600 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Wolf B. Frommer / Andreas Engel
Evaluated 22 May 2002

Converting a maltose receptor into a nascent binuclear copper oxygenase by computational design.
Benson DE, Haddy AE, Hellinga HW
Biochemistry 2002 Mar 5 41(9):3262-9 [abstract on PubMed] [related articles] [order article]
Selected by | Wolf B. Frommer
Evaluated 8 Mar 2002

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