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Ilan Davis

No longer a member of F1000[ 19-OCT-2007 - 21-MAY-2008 ]
[ Biography ] [ Evaluations ]
Biography

NAME Ilan Davis, PhD http://homepages.ed.ac.uk/ilan/
CURRENT POST Wellcome Trust Senior Research Fellow
PREVIOUS POST Lister Institute Senior Research Fellow
DEPARTMENT Wellcome Centre for Cell Biology, ICMB,
University of Edinburgh.
DATE OF BIRTH 26 May 1964
NATIONALITY British
EDUCATION, QUALIFICATIONS, PREVIOUS FELLOWSHIPS
2002-2007: Wellcome Trust Senior research fellow
2000-2002: Lister Senior Research Fellow
1996-2000: Wellcome Trust Career Development Fellow
1994-1995: Boyer Post-doctoral Fellow, UCSF, San Francisco.
1992-1994: SERC/NATO post-doctoral fellow, UCSF, San Francisco.
1986-1990: PhD in Developmental Biology, New College, University of Oxford. Asymmetric subcellular transcript localization in Drosophila.
1983-1986: BA/MA Honours, Natural Sciences. King''''s College, University of Cambridge.

Research Interests:

One of the key questions in biology is how cellular and developmental polarity is established. Our goal is to understand how molecules that set up the initial embryonic axes are targeted to their intracellular sites of function during Drosophila development. Sorting of mRNA and proteins within the cell involves active transport in and out of the nucleus as well as cytoplasmic trafficking. mRNA localisation targets proteins to specific cytoplasmic locations and is responsible for symmetry breaking in a wide range of organisms.

We have developed novel techniques for visualising mRNAs in fixed material and in living embryos at high resolution and sensitivity. We have discovered that wingless and pair-rule RNA particles are transported by cytoplasmic dynein, a minus end directed microtubule associated motor protein. We have also carried out successful genetic screens for factors required for mRNA export from the nucleus and its cytoplasmic localisation. We are using similar techniques to study the mechanism of intracellular localisation of gurken mRNA in the oocyte, which encodes the Drosophila homologue of TGFa. Gurken mRNA localisation plays a key role in the formation of the anteroposterior and the dorsoventral axes of the oocyte and embryo. We are currently working on the RNA signals that guide mRNAs to their correct intracellular destinations and on the factors that provide specificity to the process and link RNAs to molecular motors.


Recent Selected Publications

MacDougall, N., Lad, Y., Wilkie, G., Francis-Lang, H., Sullivan, W., and Davis, I. (2001). Merlin, the Drosophila homologue of Neurofibromatosis-2, is specifically required in posterior follicle cells for axis formation in the oocyte. Development. 128: 665-673.

Wilkie, G. and Davis, I. (2001) Drosophila wingless and pair-rule transcripts localise apically by dynein mediated transport of RNA particles. Cell 105: 209-219.

Tekotte, H., Berdnik, D., Török, T., Buszczak, M., Jones, L., Cooley, L., Knoblich, J. and Davis, I. (2002). Drosophila dcas is required for Importin-alpha3 nuclear export and mechano-sensory organ cell fate specification. Developmental Biology 244: 396-406.

Tekotte, H., and Davis, I. (2002). Intracellular mRNA localization: motors move messages. Trends in genetics 18: 636-642.

MacDougall, N., Clark, A., MacDougall, E. and Davis, I. (2003). Drosophila gurken (TGFalpha) mRNA localizes as particles that move within the oocyte in two Dynein-dependent steps. Developmental Cell, in press March 11 issue.

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Evaluations

Capu and Spire assemble a cytoplasmic actin mesh that maintains microtubule organization in the Drosophila oocyte.
Dahlgaard K, Raposo AA, Niccoli T, St Johnston D
Dev Cell 2007 Oct 13(4):539-53 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Marie-France Carlier / Ilan Davis
Evaluated 7 Nov 2007

bicoid RNA localization requires specific binding of an endosomal sorting complex.
Irion U, St Johnston D
Nature 2007 Feb 1 445(7127):554-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Harald Stenmark / Michael Kiebler / Roy Long / Michael Ehlers / Robert Parton / Ilan Davis
Evaluated 6 Nov 2007

The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, …, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 2005 Sep 2 309(5740):1559-63 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Kenneth Zaret / Ilan Davis
Evaluated 22 Nov 2005

The RNA-binding protein Squid is required for the establishment of anteroposterior polarity in the Drosophila oocyte.
Steinhauer J, Kalderon D
Development 2005 Dec 132(24):5515-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis
Evaluated 22 Nov 2005

Mechanics of the kinesin step.
Carter NJ, Cross RA
Nature 2005 May 19 435(7040):308-12 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Hernando Sosa / Ilan Davis
Evaluated 26 May 2005

Fragile X protein functions with lgl and the par complex in flies and mice.
Zarnescu DC, Jin P, …, Warren ST, Moses K
Dev Cell 2005 Jan 8(1):43-52 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Ilan Davis / Talila Volk / Ross Cagan
Evaluated 3 Mar 2005

MARK/PAR1 kinase is a regulator of microtubule-dependent transport in axons.
Mandelkow EM, Thies E, …, Biernat J, Mandelkow E
J Cell Biol 2004 Oct 11 167(1):99-110 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis / George Perry
Evaluated 1 Feb 2005

Drosophila nonmuscle myosin II promotes the asymmetric segregation of cell fate determinants by cortical exclusion rather than active transport.
Barros CS, Phelps CB, Brand AH
Dev Cell 2003 Dec 5(6):829-40 [abstract on PubMed] [related articles] [order article]
Selected by | Andreas Wodarz / Ilan Davis
Evaluated 14 Jan 2005

Modular aptameric sensors.
Stojanovic MN, Kolpashchikov DM
J Am Chem Soc 2004 Aug 4 126(30):9266-70 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Reinhard Luehrmann / Ilan Davis
Evaluated 22 Sep 2004

Egalitarian binds dynein light chain to establish oocyte polarity and maintain oocyte fate.
Navarro C, Puthalakath H, …, Strasser A, Lehmann R
Nat Cell Biol 2004 May 6(5):427-35 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Ilan Davis
Evaluated 21 Sep 2004

Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome.
Parks AL, Cook KR, …, Duyk G, Francis-Lang HL
Nat Genet 2004 Mar 36(3):288-92 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Trudy Mackay / Ilan Davis
Evaluated 2 Jun 2004

Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization.
Hachet O, Ephrussi A
Nature 2004 Apr 29 428(6986):959-63 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Roy Long / Lynne Maquat / Ilan Davis / Gabriele Varani / Reinhard Luehrmann
Evaluated 18 May 2004

Kinesin II mediates Vg1 mRNA transport in Xenopus oocytes.
Betley JN, Heinrich B, …, Prodon F, Deshler JO
Curr Biol 2004 Feb 3 14(3):219-24 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Ilan Davis
Evaluated 18 Mar 2004

Minimal nuclear pore complexes define FG repeat domains essential for transport.
Strawn LA, Shen T, …, Goldfarb DS, Wente SR
Nat Cell Biol 2004 Mar 6(3):197-206 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Ilan Davis / Murray Stewart / Karsten Weis
Evaluated 10 Mar 2004

An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay.
Palacios IM, Gatfield D, St Johnston D, Izaurralde E
Nature 2004 Feb 19 427(6976):753-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Lynne Maquat / Ilan Davis / Miles Wilkinson / Gabriele Varani
Evaluated 5 Mar 2004

Bicaudal D induces selective dynein-mediated microtubule minus end-directed transport.
Hoogenraad CC, Wulf P, …, de Zeeuw CI, Akhmanova A
EMBO J 2003 Nov 17 22(22):6004-15 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis
Evaluated 10 Dec 2003

A determinant for directionality of organelle transport in Drosophila embryos.
Gross SP, Guo Y, Martinez JE, Welte MA
Curr Biol 2003 Sep 30 13(19):1660-8 [abstract on PubMed] [related articles] [order article]
Selected by | Ilan Davis
Evaluated 9 Dec 2003

Asymmetric distribution of nuclear pore complexes and the cytoplasmic localization of beta2-tubulin mRNA in Chlamydomonas reinhardtii.
Colón-Ramos DA, Salisbury JL, …, Singer RH, García-Blanco MA
Dev Cell 2003 Jun 4(6):941-52 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis
Evaluated 17 Jun 2003

Establishment of developmental precision and proportions in the early Drosophila embryo.
Houchmandzadeh B, Wieschaus E, Leibler S
Nature 2002 Feb 14 415(6873):798-802 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Greg Gibson / Patricia Simpson / Marta Llimargas / Ilan Davis / Alfonso Martinez Arias
Evaluated 31 Jan 2003

Gamma-tubulin37C and gamma-tubulin ring complex protein 75 are essential for bicoid RNA localization during drosophila oogenesis.
Schnorrer F, Luschnig S, Koch I, Nüsslein-Volhard C
Dev Cell 2002 Nov 3(5):685-96 [abstract on PubMed] [related articles] [order article]
Selected by | Elizabeth Gavis / Ilan Davis
Evaluated 31 Jan 2003

Single mRNA molecules demonstrate probabilistic movement in living mammalian cells.
Fusco D, Accornero N, …, Singer RH, Bertrand E
Curr Biol 2003 Jan 21 13(2):161-7 [abstract on PubMed] [related articles] [order article]
Selected by | Ilan Davis
Evaluated 31 Jan 2003

Coordination of opposite-polarity microtubule motors.
Gross SP, Welte MA, Block SM, Wieschaus EF
J Cell Biol 2002 Feb 18 156(4):715-24 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis
Evaluated 11 Jul 2002

Measuring tubulin content in Toxoplasma gondii: a comparison of laser-scanning confocal and wide-field fluorescence microscopy.
Swedlow JR, Hu K, …, Roos DS, Murray JM
Proc Natl Acad Sci U S A 2002 Feb 19 99(4):2014-9 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Chloe Bulinski / Ilan Davis
Evaluated 11 Jul 2002

Barentsz is essential for the posterior localization of oskar mRNA and colocalizes with it to the posterior pole.
van Eeden FJ, Palacios IM, …, Weston MJ, St Johnston D
J Cell Biol 2001 Aug 6 154(3):511-23 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Ilan Davis
Evaluated 27 Feb 2002

Drosophila Y14 shuttles to the posterior of the oocyte and is required for oskar mRNA transport.
Hachet O, Ephrussi A
Curr Biol 2001 Oct 30 11(21):1666-74 [abstract on PubMed] [related articles] [order article]
Selected by | David Ish-Horowicz / Ilan Davis / Elsebet Lund
Evaluated 27 Feb 2002

Conserved signals and machinery for RNA transport in Drosophila oogenesis and embryogenesis.
Bullock SL, Ish-Horowicz D
Nature 2001 Dec 6 414(6864):611-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Manfred Frasch / Ilan Davis / Ralf-Peter Jansen / Roy Long
Evaluated 14 Jan 2002

In vivo analysis of Drosophila bicoid mRNA localization reveals a novel microtubule-dependent axis specification pathway.
Cha BJ, Koppetsch BS, Theurkauf WE
Cell 2001 Jul 13 106(1):35-46 [abstract on PubMed] [related articles] [order article]
Selected by | Ilan Davis
Evaluated 21 Sep 2001

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