homefeedbacksupportlog on 6-Jul-2008 
  About F1000

 What is F1000 Biology?
 Key features
 How it's organized
 FAQs
 Faculties and sections
 Scope of sections
 List of Faculty Members
 The evaluation system
 Citing F1000
 Take a tour of the site
 Accessing fulltexts
 PubMed linkout
 How to subscribe
 Academic subscriptions
 Corporate subscriptions
 Try F1000 for free
 Who we are
 Media information
 Librarian resources
 Press releases
 In the press
 Developing countries
 F1000 Medicine
 Terms and conditions
 Privacy policy
 Contact us


Judy Callis
Section of Molecular and Cellular Biology, University of California, Davis, Davis, United States of America

Faculty Member: PLANT BIOLOGY > Plant biochemistry & physiology [ since 4 July 2001 ]
[ Evaluations ]
to email [Help]
Evaluations

An improved SUMO fusion protein system for effective production of native proteins.
Lee CD, Sun HC, …, Leng CH, Wang TF
Protein Sci 2008 May 8 [abstract on PubMed] [related articles] [full text]
Selected by | Judy Callis
Evaluated 20 May 2008

TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis.
Szemenyei H, Hannon M, Long JA
Science 2008 Mar 7 319(5868):1384-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 12 Mar 2008

Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.
Zentella R, Zhang ZL, …, Kamiya Y, Sun TP
Plant Cell 2007 Oct 19(10):3037-57 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 18 Oct 2007

ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light.
Kim WY, Fujiwara S, …, Nam HG, Somers DE
Nature 2007 Sep 20 449(7160):356-60 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | C. Robertson McClung / Julin Maloof / Judy Callis
Evaluated 18 Oct 2007

The Arabidopsis transcription factor MYB77 modulates auxin signal transduction.
Shin R, Burch AY, …, Guilfoyle TJ, Schachtman DP
Plant Cell 2007 Aug 19(8):2440-53 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nico Von Wiren / Eric Lam / Judy Callis
Evaluated 18 Oct 2007

The JAZ family of repressors is the missing link in jasmonate signalling.
Chini A, Fonseca S, …, Micol JL, Solano R
Nature 2007 Aug 9 448(7154):666-71 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis / Tai-ping Sun
Evaluated 19 Jul 2007

JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling.
Thines B, Katsir L, …, Howe GA, Browse J
Nature 2007 Aug 9 448(7154):661-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis / Tai-ping Sun
Evaluated 19 Jul 2007

The cauliflower mosaic virus (CaMV) 35S promoter sequence alters the level and patterns of activity of adjacent tissue- and organ-specific gene promoters.
Zheng X, Deng W, …, Pei Y, Li Y
Plant Cell Rep 2007 Aug 26(8):1195-203 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 20 Mar 2007

Ralstonia solanacearum requires F-box-like domain-containing type III effectors to promote disease on several host plants.
Angot A, Peeters N, …, Boucher C, Genin S
Proc Natl Acad Sci U S A 2006 Sep 26 103(39):14620-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 12 Oct 2006

Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery.
Angers S, Li T, …, Moon RT, Zheng N
Nature 2006 Oct 5 443(7111):590-3 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis / Xiayang Qiu
Evaluated 11 Oct 2006

A small acidic protein 1 (SMAP1) mediates responses of the Arabidopsis root to the synthetic auxin 2,4-dichlorophenoxyacetic acid.
Rahman A, Nakasone A, …, Tanaka A, Oono Y
Plant J 2006 Sep 47(5):788-801 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Yunde Zhao / Judy Callis
Evaluated 6 Oct 2006

The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.
Dong CH, Agarwal M, …, Xie Q, Zhu JK
Proc Natl Acad Sci U S A 2006 May 23 103(21):8281-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 3 Jul 2006

CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.
Bernhardt A, Lechner E, …, Genschik P, Hellmann H
Plant J 2006 Aug 47(4):591-603 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 3 Jul 2006

Identification and characterization of Arabidopsis gibberellin receptors.
Nakajima M, Shimada A, …, Matsuoka M, Yamaguchi I
Plant J 2006 Jun 46(5):880-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis / Seth J Davis
Evaluated 3 Jul 2006

The RNA-binding protein FCA is an abscisic acid receptor.
Razem FA, El-Kereamy A, Abrams SR, Hill RD
Nature 2006 Jan 19 439(7074):290-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Caren Chang / Martin Robert McAinsh / Michael Blatt / Detlef Weigel / Alistair Hetherington / Judy Callis / Gabriele Varani
Evaluated 22 Feb 2006

A mutation in the anticodon of a single tRNAala is sufficient to confer auxin resistance in Arabidopsis.
Perry J, Dai X, Zhao Y
Plant Physiol 2005 Nov 139(3):1284-90 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 15 Dec 2005

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
Wagner JR, Brunzelle JS, Forest KT, Vierstra RD
Nature 2005 Nov 17 438(7066):325-31 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Tetsuji Okada / Sophie Jackson / Judy Callis
Evaluated 15 Dec 2005

An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development.
Qin G, Gu H, …, Chen Z, Qu LJ
Plant Cell 2005 Oct 17(10):2693-704 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Xing Wang Deng
Evaluated 31 Oct 2005

GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.
Ueguchi-Tanaka M, Ashikari M, …, Yamaguchi I, Matsuoka M
Nature 2005 Sep 29 437(7059):693-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Yunde Zhao / Patrick Masson / Simon Gilroy / Judy Callis / Tai-ping Sun / Philip Benfey / Seth J Davis
Evaluated 28 Oct 2005

Arabidopsis CUL3A and CUL3B genes are essential for normal embryogenesis.
Thomann A, Brukhin V, …, Grossniklaus U, Genschik P
Plant J 2005 Aug 43(3):437-48 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 9 Aug 2005

The conserved protein DCN-1/Dcn1p is required for cullin neddylation in C. elegans and S. cerevisiae.
Kurz T, Ozlü N, …, Bowerman B, Peter M
Nature 2005 Jun 30 435(7046):1257-61 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Gerhard Braus / Judy Callis
Evaluated 4 Aug 2005

FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis.
Imaizumi T, Schultz TF, …, Ho LA, Kay SA
Science 2005 Jul 8 309(5732):293-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Richard M. Amasino / Tai-ping Sun / Judy Callis
Evaluated 3 Aug 2005

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
Yamasaki K, Kigawa T, …, Shinozaki K, Yokoyama S
J Mol Biol 2005 Apr 29 348(2):253-64 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 27 May 2005

The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.
Miura K, Rus A, …, Yun DJ, Hasegawa PM
Proc Natl Acad Sci U S A 2005 May 24 102(21):7760-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 27 May 2005

Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes.
Yanagawa Y, Sullivan JA, …, Wang J, Deng XW
Genes Dev 2004 Sep 1 18(17):2172-81 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 4 Nov 2004

An antigenic peptide produced by peptide splicing in the proteasome.
Vigneron N, Stroobant V, …, Boon T, Van den Eynde BJ
Science 2004 Apr 23 304(5670):587-90 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Peter Van Endert / Shiv Pillai / Victor Engelhard / Judy Callis
Evaluated 25 Aug 2004

The oxylipin signal jasmonic acid is activated by an enzyme that conjugates it to isoleucine in Arabidopsis.
Staswick PE, Tiryaki I
Plant Cell 2004 Aug 16(8):2117-27 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 25 Aug 2004

Distinct machinery is required in Saccharomyces cerevisiae for the endoplasmic reticulum-associated degradation of a multispanning membrane protein and a soluble luminal protein.
Huyer G, Piluek WF, …, Brodsky JL, Michaelis S
J Biol Chem 2004 Sep 10 279(37):38369-78 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 26 Jul 2004

The Arabidopsis mutant sleepy1gar2-1 protein promotes plant growth by increasing the affinity of the SCFSLY1 E3 ubiquitin ligase for DELLA protein substrates.
Fu X, Richards DE, …, Burton N, Harberd NP
Plant Cell 2004 Jun 16(6):1406-18 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Seth J Davis / Judy Callis
Evaluated 23 Jul 2004

Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase.
Chuang HW, Zhang W, Gray WM
Plant Cell 2004 Jul 16(7):1883-97 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 23 Jul 2004

Aux/IAA proteins contain a potent transcriptional repression domain.
Tiwari SB, Hagen G, Guilfoyle TJ
Plant Cell 2004 Feb 16(2):533-43 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Emmanuel Liscum / Judy Callis
Evaluated 25 Mar 2004

The Arabidopsis KAKTUS gene encodes a HECT protein and controls the number of endoreduplication cycles.
El Refy A, Perazza D, …, Herzog M, Bonneville JM
Mol Genet Genomics 2003 Dec 270(5):403-14 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis / Jaideep Mathur
Evaluated 21 Oct 2003

Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo.
Peng Z, Shen Y, …, Vierstra RD, Deng XW
Curr Biol 2003 Jul 1 13(13):R504-5 [abstract on PubMed] [related articles] [order article]
Selected by | Judy Callis
Evaluated 29 Jul 2003

LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1.
Seo HS, Yang JY, …, Ballesteros ML, Chua NH
Nature 2003 Jun 26 423(6943):995-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 29 Jul 2003

Arabidopsis AXR6 encodes CUL1 implicating SCF E3 ligases in auxin regulation of embryogenesis.
Hellmann H, Hobbie L, …, Reinhardt D, Estelle M
EMBO J 2003 Jul 1 22(13):3314-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 29 Jul 2003

Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis.
Alonso JM, Stepanova AN, …, Ausubel FM, Ecker JR
Proc Natl Acad Sci U S A 2003 Mar 4 100(5):2992-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Caren Chang
Evaluated 1 May 2003

Yokonolide B, a novel inhibitor of auxin action, blocks degradation of AUX/IAA factors.
Hayashi K, Jones AM, …, Kondo H, Nozaki H
J Biol Chem 2003 Jun 27 278(26):23797-806 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Brian Forde / Judy Callis
Evaluated 1 May 2003

The RUB/Nedd8 conjugation pathway is required for early development in Arabidopsis.
Dharmasiri S, Dharmasiri N, Hellmann H, Estelle M
EMBO J 2003 Apr 15 22(8):1762-70 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 30 Apr 2003

The auxin-induced maize gene ZmSAUR2 encodes a short-lived nuclear protein expressed in elongating tissues.
Knauss S, Rohrmeier T, Lehle L
J Biol Chem 2003 Jun 27 278(26):23936-43 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 30 Apr 2003

Parc: a cytoplasmic anchor for p53.
Nikolaev AY, Li M, …, Qin J, Gu W
Cell 2003 Jan 10 112(1):29-40 [abstract on PubMed] [related articles] [order article]
Selected by | Judy Callis
Evaluated 21 Jan 2003

Multiple ubiquitin ligase-mediated processes require COP9 signalosome and AXR1 function.
Schwechheimer C, Serino G, Deng XW
Plant Cell 2002 Oct 14(10):2553-63 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 30 Oct 2002

Role of predicted metalloprotease motif of Jab1/Csn5 in cleavage of Nedd8 from Cul1.
Cope GA, Suh GS, …, Koonin EV, Deshaies RJ
Science 2002 Oct 18 298(5593):608-11 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Antony Carr / Judy Callis
Evaluated 6 Sep 2002

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome.
Verma R, Aravind L, …, Koonin EV, Deshaies RJ
Science 2002 Oct 18 298(5593):611-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Philip Coffino
Evaluated 6 Sep 2002

Proteasome subunit Rpn1 binds ubiquitin-like protein domains.
Elsasser S, Gali RR, …, Dittmar GA, Finley D
Nat Cell Biol 2002 Sep 4(9):725-30 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Judy Callis
Evaluated 4 Sep 2002

Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation.
Staswick PE, Tiryaki I, Rowe ML
Plant Cell 2002 Jun 14(6):1405-15 [abstract on PubMed] [related articles] [FREE full text]
Selected by | John Browse / Judy Callis / Joy Bergelson
Evaluated 4 Sep 2002

The novel human DNA helicase hFBH1 is an F-box protein.
Kim J, Kim JH, …, Pan ZQ, Seo YS
J Biol Chem 2002 Jul 5 277(27):24530-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 25 Jul 2002

The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning.
Hamann T, Benkova E, …, Kientz M, Jürgens G
Genes Dev 2002 Jul 1 16(13):1610-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Emmanuel Liscum
Evaluated 23 Jul 2002

Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8).
Hardtke CS, Okamoto H, Stoop-Myer C, Deng XW
Plant J 2002 May 30(4):385-94 [abstract on PubMed] [related articles] [order article]
Selected by | Judy Callis
Evaluated 6 Jun 2002

MAX1 and MAX2 control shoot lateral branching in Arabidopsis.
Stirnberg P, van De Sande K, Leyser HM
Development 2002 Mar 129(5):1131-41 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Detlef Weigel / Judy Callis
Evaluated 11 Apr 2002

Role of a ubiquitin-like modification in polarized morphogenesis.
Dittmar GA, Wilkinson CR, Jedrzejewski PT, Finley D
Science 2002 Mar 29 295(5564):2442-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis / Brenda Andrews
Evaluated 11 Apr 2002

The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.
Itoh H, Ueguchi-Tanaka M, …, Ashikari M, Matsuoka M
Plant Cell 2002 Jan 14(1):57-70 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 12 Mar 2002

A gene encoding a protein modified by the phytohormone indoleacetic acid.
Walz A, Park S, …, Momonoki YS, Cohen JD
Proc Natl Acad Sci U S A 2002 Feb 5 99(3):1718-23 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 12 Mar 2002

Direct interaction of Arabidopsis cryptochromes with COP1 in light control development.
Wang H, Ma LG, …, Zhao HY, Deng XW
Science 2001 Oct 5 294(5540):154-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Judy Callis
Evaluated 28 Nov 2001

The phytochrome A-specific signaling intermediate SPA1 interacts directly with COP1, a constitutive repressor of light signaling in Arabidopsis.
Hoecker U, Quail PH
J Biol Chem 2001 Oct 12 276(41):38173-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Emmanuel Liscum / Judy Callis
Evaluated 2 Nov 2001

^Top  Back to Faculty Members


© 1999-2008 Biology Reports Ltd unless otherwise stated < info@f1000.com >   Terms and conditions   Legal info