Contact information:

David J. States, M.D., Ph.D.
Professor of Human Genetics
Director of Bioinformatics
University of Michigan School of Medicine
Medical Science Building II, Room 5622A
Ann Arbor, MI 48109
USA
email: dstates@umich.edu
tel: (734) 615-5510
fax: (734) 615-6553
URL: http://stateslab.bioinformatics.med.umich.edu

Research interests:

Computational analysis of genome regulation.

http://stateslab.bioinformatics.med.umich.edu

Tectonic shifts in the health information economy. Mandl KD, Kohane IS N Engl J Med 2008 Apr 17 358(16):1732-7 [abstract on PubMed] [related articles] [full text] [order article] Selected by | David States Evaluated 21 Apr 2008 Suppression of immediate-early viral gene expression by herpesvirus-coded microRNAs: Implications for latency. Murphy E, Vanícek J, …, Shenk T, Levine AJ Proc Natl Acad Sci U S A 2008 Mar 31 105 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 10 Apr 2008 Framework for a protein ontology. Natale DA, Arighi CN, …, Smith B, Wu CH BMC Bioinformatics 2007 8 Suppl 9:S1 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 14 Jan 2008 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. ENCODE Project Consortium Nature 2007 Jun 14 447(7146):799-816 [abstract on PubMed] [related articles] [full text] [order article] Selected by | David States / Andrew S. McCallion / Charles Coutelle Evaluated 27 Jul 2007 Global variation in copy number in the human genome. Redon R, Ishikawa S, …, Scherer SW, Hurles ME Nature 2006 Nov 23 444(7118):444-54 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Jonathan Flint / David States / Eileen Dolan / Michele Ramsay Evaluated 29 Nov 2006 Extent of modifications in human proteome samples and their effect on dynamic range of analysis in shotgun proteomics. Nielsen ML, Savitski MM, Zubarev RA Mol Cell Proteomics 2006 Dec 5(12):2384-91 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 20 Oct 2006 Water properties from first principles: simulations by a general-purpose quantum mechanical polarizable force field. Donchev AG, Galkin NG, …, Subbotin MV, Tarasov VI Proc Natl Acad Sci U S A 2006 Jun 6 103(23):8613-7 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 13 Jun 2006 Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome. Bieda M, Xu X, …, Green R, Farnham PJ Genome Res 2006 May 16(5):595-605 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 7 Jun 2006 A whole-genome admixture scan finds a candidate locus for multiple sclerosis susceptibility. Reich D, Patterson N, …, Oksenberg JR, Hafler DA Nat Genet 2005 Oct 37(10):1113-8 [abstract on PubMed] [related articles] [full text] [order article] Selected by | David States Evaluated 29 Sep 2005 cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster. Kulkarni MM, Arnosti DN Mol Cell Biol 2005 May 25(9):3411-20 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 21 Apr 2005 A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q. Yamada Y, Watanabe H, …, Sakaki Y, Ito T Genome Res 2004 Feb 14(2):247-66 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 31 Mar 2004 Mixture models for assessing differential expression in complex tissues using microarray data. Ghosh D Bioinformatics 2004 Jul 22 20(11):1663-9 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 15 Mar 2004 Finding and evaluating community structure in networks. Newman ME, Girvan M Phys Rev E Stat Nonlin Soft Matter Phys 2004 Feb 69(2 Pt 2):026113 [abstract on PubMed] [related articles] [order article] Selected by | David States Evaluated 11 Mar 2004 MicroRNAs modulate hematopoietic lineage differentiation. Chen CZ, Li L, Lodish HF, Bartel DP Science 2004 Jan 2 303(5654):83-6 [abstract on PubMed] [related articles] [FREE full text] Selected by | Dinah Singer / David States / Shiv Pillai / Gabriele Varani Evaluated 11 Mar 2004 Allelic variation in gene expression is common in the human genome. Lo HS, Wang Z, …, Buetow KH, Lee MP Genome Res 2003 Aug 13(8):1855-62 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 25 Sep 2003 Predictive identification of exonic splicing enhancers in human genes. Fairbrother WG, Yeh RF, Sharp PA, Burge CB Science 2002 Aug 9 297(5583):1007-13 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States / Lawrence Chasin / Gabriele Varani Evaluated 25 Jul 2002 A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes. Strichman-Almashanu LZ, Lee RS, …, Frieman MB, Feinberg AP Genome Res 2002 Apr 12(4):543-54 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 25 Apr 2002 GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis. Horak CE, Mahajan MC, …, Weissman SM, Snyder M Proc Natl Acad Sci U S A 2002 Mar 5 99(5):2924-9 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 14 Mar 2002 Dynamic association of transcriptional activation domains and regulatory regions in Saccharomyces cerevisiae heat shock factor. Chen T, Parker CS Proc Natl Acad Sci U S A 2002 Feb 5 99(3):1200-5 [abstract on PubMed] [related articles] [FREE full text] Selected by | David States Evaluated 13 Mar 2002 Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Berman BP, Nibu Y, …, Rubin GM, Eisen MB Proc Natl Acad Sci U S A 2002 Jan 22 99(2):757-62 [abstract on PubMed] [related articles] [FREE full text] Selected by | David Stern / Oliver Hobert / David States / Manfred Frasch / Donald Rio Evaluated 8 Feb 2002

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