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Vivian Cody
Department of Structural Biology, Hauptman-Woodward Medical Research Institute, United States of America

Faculty Member: STRUCTURAL BIOLOGY > Biomacromolecule-ligand interactions [ since 11 June 2002 ]
[ Homepage ] [ Evaluations ]
Home page

http://www.hwi.buffalo.edu/Faculty/Cody/Cody.html

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Evaluations

Multiple origins of resistance-conferring mutations in Plasmodium vivax dihydrofolate reductase.
Hawkins VN, Auliff A, …, Na-Bangchang K, Sibley CH
Malar J 2008 Apr 28 7(1):72 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 16 May 2008

Synthesis and Biological Activity of a 3,4,5-Trimethoxybenzoyl Ester Analogue of Epicatechin-3-gallate.
Sánchez-Del-Campo L, Otón F, …, Chazarra S, Rodríguez-López JN
J Med Chem 2008 Mar 7 0 [abstract on PubMed] [related articles] [full text]
Selected by | Vivian Cody
Evaluated 20 Mar 2008

Probing the Role of Parasite-Specific, Distant Structural Regions on Communication and Catalysis in the Bifunctional Thymidylate Synthase-Dihydrofolate Reductase from Plasmodium falciparum.
Dasgupta T, Anderson KS
Biochemistry 2008 Jan 12 [Epub ahead of print] [abstract on PubMed] [related articles] [full text]
Selected by | Vivian Cody
Evaluated 23 Jan 2008

3-Iodothyronamine: a novel hormone controlling the balance between glucose and lipid utilisation.
Braulke LJ, Klingenspor M, …, Scanlan TS, Heldmaier G
J Comp Physiol [B] 2008 Feb 178(2):167-77 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 10 Dec 2007

Identification of a cis-acting element of human dihydrofolate reductase mRNA.
Tai N, Schmitz JC, …, O'Neill MB, Chu E
Biochem Biophys Res Commun 2007 Sep 21 [abstract on PubMed] [related articles] [full text]
Selected by | Vivian Cody
Evaluated 10 Dec 2007

Four transthyretin-like genes of the migratory plant-parasitic nematode Radopholus similis: members of an extensive nematode-specific family.
Jacob J, Vanholme B, Haegeman A, Gheysen G
Gene 2007 Nov 1 402(1-2):9-19 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 14 Sep 2007

Conformational change of the methionine 20 loop of Escherichia coli dihydrofolate reductase modulates pKa of the bound dihydrofolate.
Khavrutskii IV, Price DJ, Lee J, Brooks CL
Protein Sci 2007 Jun 16(6):1087-100 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 5 Jun 2007

Transgenic rescue of methotrexate-induced teratogenicity in Drosophila melanogaster.
Affleck JG, Walker VK
Toxicol Sci 2007 Oct 99(2):522-31 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 5 Jun 2007

Comparative MD analysis of the stability of transthyretin providing insight into the fibrillation mechanism.
Sørensen J, Hamelberg D, Schiøtt B, McCammon JA
Biopolymers 2007 May 86(1):73-82 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 16 Mar 2007

Expression, purification, and in vitro cysteine-10 modification of native sequence recombinant human transthyretin.
Kingsbury JS, Klimtchuk ES, …, Costello CE, Connors LH
Protein Expr Purif 2007 Jun 53(2):370-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 7 Mar 2007

A 2.13 A structure of E. coli dihydrofolate reductase bound to a novel competitive inhibitor reveals a new binding surface involving the M20 loop region.
Summerfield RL, Daigle DM, …, Brown ED, Junop MS
J Med Chem 2006 Nov 30 49(24):6977-86 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 15 Dec 2006

Structural modeling of protein interactions by analogy: application to PSD-95.
Korkin D, Davis FP, …, Kennedy MB, Sali A
PLoS Comput Biol 2006 Nov 10 2(11):e153 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 30 Nov 2006

NMR-based model reveals the structural determinants of mammalian arylamine N-acetyltransferase substrate specificity.
Zhang N, Liu L, …, Hanna PE, Walters KJ
J Mol Biol 2006 Oct 13 363(1):188-200 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 27 Sep 2006

Formate-reduced E. coli formate dehydrogenase H: The reinterpretation of the crystal structure suggests a new reaction mechanism.
Raaijmakers HC, Romão MJ
J Biol Inorg Chem 2006 Oct 11(7):849-54 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 20 Jul 2006

The transthyretin-related protein: structural investigation of a novel protein family.
Lundberg E, Bäckström S, Sauer UH, Sauer-Eriksson AE
J Struct Biol 2006 Sep 155(3):445-57 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 6 Jun 2006

Map2mod--a server for evaluation of crystallographic models and their agreement with electron density maps.
Kirillova O, Minor W
Bioinformatics 2006 Jul 1 22(13):1660-1 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 8 May 2006

Localization of a substrate binding domain of the human reduced folate carrier to transmembrane domain 11 by radioaffinity labeling and cysteine-substituted accessibility methods.
Hou Z, Stapels SE, Haska CL, Matherly LH
J Biol Chem 2005 Oct 28 280(43):36206-13 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 20 Sep 2005

2,4-diaminopteridine-based compounds as precursors for de novo synthesis of antifolates: a novel class of antimalarials.
Nduati E, Hunt S, Kamau EM, Nzila A
Antimicrob Agents Chemother 2005 Sep 49(9):3652-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 12 Sep 2005

Expression of recombinant membrane-bound type I iodothyronine deiodinase in yeast.
Kuiper GG, Klootwijk W, Visser TJ
J Mol Endocrinol 2005 Jun 34(3):865-78 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 29 Jun 2005

The biological and chemical basis for tissue-selective amyloid disease.
Sekijima Y, Wiseman RL, …, Balch WE, Kelly JW
Cell 2005 Apr 8 121(1):73-85 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 20 May 2005

Kinetic assay for high-throughput screening of in vitro transthyretin amyloid fibrillogenesis inhibitors.
Dolado I, Nieto J, …, Valencia G, Planas A
J Comb Chem 2005 Mar-Apr 7(2):246-52 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 19 Apr 2005

FTIR reveals structural differences between native beta-sheet proteins and amyloid fibrils.
Zandomeneghi G, Krebs MR, McCammon MG, Fändrich M
Protein Sci 2004 Dec 13(12):3314-21 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 25 Jan 2005

Thyroxine-thyroid hormone receptor interactions.
Sandler B, Webb P, …, Fletterick RJ, Baxter JD
J Biol Chem 2004 Dec 31 279(53):55801-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 22 Nov 2004

The crystal structure of transthyretin in complex with diethylstilbestrol: a promising template for the design of amyloid inhibitors.
Morais-de-Sá E, Pereira PJ, Saraiva MJ, Damas AM
J Biol Chem 2004 Dec 17 279(51):53483-90 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 19 Nov 2004

Two different types of amyloid deposits--apolipoprotein A-IV and transthyretin--in a patient with systemic amyloidosis.
Bergström J, Murphy CL, …, Hellman U, Westermark P
Lab Invest 2004 Aug 84(8):981-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 25 May 2004

Methotrexate is a novel inducer of rat liver and intestinal sulfotransferases.
Maiti S, Chen G
Arch Biochem Biophys 2003 Oct 15 418(2):161-8 [abstract on PubMed] [related articles] [order article]
Selected by | Vivian Cody
Evaluated 15 Oct 2003

NMR studies of the interaction of a type II dihydrofolate reductase with pyridine nucleotides reveal unexpected phosphatase and reductase activity.
Pitcher WH, DeRose EF, …, Howell EE, London RE
Biochemistry 2003 Sep 30 42(38):11150-60 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Vivian Cody
Evaluated 15 Oct 2003

The iodothyronine selenodeiodinases are thioredoxin-fold family proteins containing a glycoside hydrolase clan GH-A-like structure.
Callebaut I, Curcio-Morelli C, …, Larsen PR, Bianco AC
J Biol Chem 2003 Sep 19 278(38):36887-96 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 8 Aug 2003

Deubiquitination of type 2 iodothyronine deiodinase by von Hippel-Lindau protein-interacting deubiquitinating enzymes regulates thyroid hormone activation.
Curcio-Morelli C, Zavacki AM, …, Wu G, Bianco AC
J Clin Invest 2003 Jul 112(2):189-96 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 28 Jul 2003

Life without dihydrofolate reductase FolA.
Myllykallio H, Leduc D, Filee J, Liebl U
Trends Microbiol 2003 May 11(5):220-3 [abstract on PubMed] [related articles] [order article]
Selected by | Vivian Cody
Evaluated 26 Jun 2003

A molecular docking strategy identifies Eosin B as a non-active site inhibitor of protozoal bifunctional thymidylate synthase-dihydrofolate reductase.
Atreya CE, Johnson EF, …, Shoichet BK, Anderson KS
J Biol Chem 2003 Apr 18 278(16):14092-100 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 9 May 2003

Insights into antifolate resistance from malarial DHFR-TS structures.
Yuvaniyama J, Chitnumsub P, …, Walkinshaw MD, Yuthavong Y
Nat Struct Biol 2003 May 10(5):357-65 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Carol Sibley / Vivian Cody / Karen Anderson / Patricia C. Weber
Evaluated 2 May 2003

The evolutionary and integrative roles of transthyretin in thyroid hormone homeostasis.
Schreiber G
J Endocrinol 2002 Oct 175(1):61-73 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 18 Nov 2002

Disulfide-bond formation in the transthyretin mutant Y114C prevents amyloid fibril formation in vivo and in vitro.
Eneqvist T, Olofsson A, …, Lundgren E, Sauer-Eriksson AE
Biochemistry 2002 Nov 5 41(44):13143-51 [abstract on PubMed] [related articles] [order article]
Selected by | Vivian Cody
Evaluated 15 Nov 2002

Sequence-dependent denaturation energetics: A major determinant in amyloid disease diversity.
Hammarström P, Jiang X, …, Powers ET, Kelly JW
Proc Natl Acad Sci U S A 2002 Dec 10 99 Suppl 4:16427-32 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Vivian Cody
Evaluated 13 Nov 2002

Thyroid hormone distribution in the mouse brain: the role of transthyretin.
Palha JA, Nissanov J, …, Gottesman M, Saraiva MJ
Neuroscience 2002 113(4):837-47 [abstract on PubMed] [related articles] [order article]
Selected by | Vivian Cody
Evaluated 12 Sep 2002

Molecular modeling of wild-type and antifolate resistant mutant Plasmodium falciparum DHFR.
Delfino RT, Santos-Filho OA, Figueroa-Villar JD
Biophys Chem 2002 Aug 2 98(3):287-300 [abstract on PubMed] [related articles] [order article]
Selected by | Vivian Cody
Evaluated 12 Sep 2002

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