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Nicolas Galtier
Université Montpellier II, Montpellier, France

Faculty Member: Genomics & Genetics > Evolutionary/Comparative Genetics [ since 19 February 2004 ]
[ Homepage ] [ Evaluations ]
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http://www.lirmm.fr/~guindon/ihp/galtier.html

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Evaluations

Identifying coevolving partners from paralogous gene families.
Yeang CH
Evol Bioinform Online 2008 4:97-107 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julien Dutheil and Nicolas Galtier
Evaluated 29 Jun 2009

Phylogenetic inference under recombination using Bayesian stochastic topology selection.
Webb A, Hancock JM, Holmes CC
Bioinformatics 2009 Jan 15 25(2):197-203 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Julien Dutheil and Nicolas Galtier
Evaluated 25 Mar 2009

Cryptic Variation in the Human Mutation Rate.
Hodgkinson A, Ladoukakis E, Eyre-Walker A
PLoS Biol 2009 Feb 3 7(2):e27 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 23 Feb 2009

Developmental constraints on vertebrate genome evolution.
Roux J, Robinson-Rechavi M
PLoS Genet 2008 Dec 4(12):e1000311 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 20 Feb 2009

Parallel adaptations to high temperatures in the Archaean eon.
Boussau B, Blanquart S, …, Lartillot N, Gouy M
Nature 2008 Dec 18 456(7224):942-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Camilla Nesbo / Nicolas Galtier / Rainer Merkl and Reinhard Sterner
Evaluated 12 Jan 2009

An evolutionary footprint of age-related natural selection in mitochondrial DNA.
Min XJ, Hickey DA
J Mol Evol 2008 Oct 67(4):412-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 11 Dec 2008

Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection.
Rosso L, Marques AC, Reichert AS, Kaessmann H
PLoS Genet 2008 Aug 4(8):e1000150 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 1 Sep 2008

Adaptive evolution and functional redesign of core metabolic proteins in snakes.
Castoe TA, Jiang ZJ, …, Wang ZO, Pollock DD
PLoS ONE 2008 3(5):e2201 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 29 Aug 2008

Population genetics without intraspecific data.
Thorne JL, Choi SC, …, Higgs PG, Kishino H
Mol Biol Evol 2007 Aug 24(8):1667-77 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 19 May 2008

Structure and evolution of the atypical mitochondrial genome of Armadillidium vulgare (Isopoda, Crustacea).
Marcadé I, Cordaux R, …, Bouchon D, Raimond R
J Mol Evol 2007 Dec 65(6):651-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 19 Mar 2008

Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis.
Suga K, Mark Welch DB, …, Sakakura Y, Hagiwara A
Mol Biol Evol 2008 Mar 7 [abstract on PubMed] [related articles] [full text]
Selected by | Nicolas Galtier
Evaluated 19 Mar 2008

Contrasting patterns of synonymous and nonsynonymous sequence evolution in asexual and sexual freshwater snail lineages.
Johnson SG, Howard RS
Evolution Int J Org Evolution 2007 Nov 61(11):2728-35 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 20 Dec 2007

Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates.
Emerson BC
Syst Biol 2007 Apr 56(2):337-45 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 17 Oct 2007

Evidence for time dependency of molecular rate estimates.
Ho SY, Shapiro B, …, Cooper A, Drummond AJ
Syst Biol 2007 Jun 56(3):515-22 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 17 Oct 2007

Heads or tails: a simple reliability check for multiple sequence alignments.
Landan G, Graur D
Mol Biol Evol 2007 Jun 24(6):1380-3 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 8 Oct 2007

Fair-balance paradox, star-tree paradox, and Bayesian phylogenetics.
Yang Z
Mol Biol Evol 2007 Aug 24(8):1639-55 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 26 Jun 2007

Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome.
Berlin S, Tomaras D, Charlesworth B
Heredity 2007 Oct 99(4):389-96 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 18 Jun 2007

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Mikkelsen TS, Wakefield MJ, …, Lander ES, Lindblad-Toh K
Nature 2007 May 10 447(7141):167-77 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 24 May 2007

Adaptive evolution of color vision as seen through the eyes of butterflies.
Frentiu FD, Bernard GD, …, Prudic KL, Briscoe AD
Proc Natl Acad Sci U S A 2007 May 15 104 Suppl 1:8634-40 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 22 May 2007

Extreme genomic variation in a natural population.
Small KS, Brudno M, Hill MM, Sidow A
Proc Natl Acad Sci U S A 2007 Mar 27 104(13):5698-703 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 4 Apr 2007

Mammalian monogamy is not controlled by a single gene.
Fink S, Excoffier L, Heckel G
Proc Natl Acad Sci U S A 2006 Jul 18 103(29):10956-60 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Bart Kempenaers / Nicolas Galtier
Evaluated 24 Jan 2007

A combined empirical and mechanistic codon model.
Doron-Faigenboim A, Pupko T
Mol Biol Evol 2007 Feb 24(2):388-97 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 24 Jan 2007

Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases.
Brindefalk B, Viklund J, …, Thollesson M, Andersson SG
Mol Biol Evol 2007 Mar 24(3):743-56 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 24 Jan 2007

Phylogenetic methodology for detecting protein interactions.
Waddell PJ, Kishino H, Ota R
Mol Biol Evol 2007 Mar 24(3):650-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 23 Jan 2007

Ancient horizontal gene transfer can benefit phylogenetic reconstruction.
Huang J, Gogarten JP
Trends Genet 2006-07-01 22(7):361-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 7 Nov 2006

Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria.
Rot C, Goldfarb I, Ilan M, Huchon D
BMC Evol Biol 2006 6:71 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 27 Oct 2006

Human polymorphism around recombination hotspots.
Spencer CC
Biochem Soc Trans 2006 Aug 34(Pt 4):535-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 7 Sep 2006

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene.
Duret L, Chureau C, …, Weissenbach J, Avner P
Science 2006 Jun 16 312(5780):1653-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jim Thomas / Nicolas Galtier / Molly Przeworski / Daniel Gallie / Manyuan Long / Gabriele Varani
Evaluated 12 Jul 2006

Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys.
Zhang J
Nat Genet 2006 Jul 38(7):819-23 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier / Joshua Akey / Helene Rosenberg
Evaluated 21 Jun 2006

High guanine and cytosine content increases mRNA levels in mammalian cells.
Kudla G, Lipinski L, …, Helwak A, Zylicz M
PLoS Biol 2006 Jun 4(6):e180 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 19 Jun 2006

Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain.
Forterre P
Proc Natl Acad Sci U S A 2006 Mar 7 103(10):3669-74 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 3 May 2006

Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution.
Zakon HH, Lu Y, Zwickl DJ, Hillis DM
Proc Natl Acad Sci U S A 2006 Mar 7 103(10):3675-80 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Edmund Brodie / Nicolas Galtier
Evaluated 2 May 2006

The origins of eukaryotic gene structure.
Lynch M
Mol Biol Evol 2006 Feb 23(2):450-68 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 10 Feb 2006

Variation in synonymous codon use and DNA polymorphism within the Drosophila genome.
Bierne N, Eyre-Walker A
J Evol Biol 2006 Jan 19(1):1-11 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 27 Jan 2006

A fine-scale map of recombination rates and hotspots across the human genome.
Myers S, Bottolo L, …, McVean G, Donnelly P
Science 2005 Oct 14 310(5746):321-4 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Richard L. Stevens / Charles Auffray / Nicolas Galtier
Evaluated 7 Dec 2005

Environments shape the nucleotide composition of genomes.
Foerstner KU, von Mering C, Hooper SD, Bork P
EMBO Rep 2005 Dec 6(12):1208-13 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 18 Oct 2005

A scan for positively selected genes in the genomes of humans and chimpanzees.
Nielsen R, Bustamante C, …, Adams MD, Cargill M
PLoS Biol 2005 Jun 3(6):e170 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 18 Oct 2005

Site-to-site variation of synonymous substitution rates.
Pond SK, Muse SV
Mol Biol Evol 2005 Dec 22(12):2375-85 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 6 Sep 2005

Parallel radiations in the primary clades of birds.
Fain MG, Houde P
Evolution Int J Org Evolution 2004 Nov 58(11):2558-73 [abstract on PubMed] [related articles] [order article]
Selected by | Nicolas Galtier
Evaluated 23 Aug 2005

Germline bottlenecks, biparental inheritance and selection on mitochondrial variants: a two-level selection model.
Roze D, Rousset F, Michalakis Y
Genetics 2005 Jul 170(3):1385-99 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 10 Jun 2005

Homology-dependent methylation in primate repetitive DNA.
Meunier J, Khelifi A, Navratil V, Duret L
Proc Natl Acad Sci U S A 2005 Apr 12 102(15):5471-6 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 25 Apr 2005

Evidence for widespread degradation of gene control regions in hominid genomes.
Keightley PD, Lercher MJ, Eyre-Walker A
PLoS Biol 2005 Feb 3(2):e42 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Molly Przeworski / Nicolas Galtier
Evaluated 18 Mar 2005

Can codon usage bias explain intron phase distributions and exon symmetry?
Ruvinsky A, Eskesen ST, Eskesen FN, Hurst LD
J Mol Evol 2005 Jan 60(1):99-104 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 20 Jan 2005

A broad survey of recombination in animal mitochondria.
Piganeau G, Gardner M, Eyre-Walker A
Mol Biol Evol 2004 Dec 21(12):2319-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 23 Nov 2004

Genetic analysis of lice supports direct contact between modern and archaic humans.
Reed DL, Smith VS, …, Rogers AR, Clayton DH
PLoS Biol 2004 Nov 2(11):e340 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier / Andreas Ziegler
Evaluated 21 Oct 2004

Ancestral inference on gene trees under selection.
Coop G, Griffiths RC
Theor Popul Biol 2004 Nov 66(3):219-32 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 18 Oct 2004

Isochore structures in the genome of the plant Arabidopsis thaliana.
Zhang R, Zhang CT
J Mol Evol 2004 Aug 59(2):227-38 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 16 Sep 2004

Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana.
Marais G, Charlesworth B, Wright SI
Genome Biol 2004 5(7):R45 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 27 Jul 2004

Positive selection at sites of multiple amino acid replacements since rat-mouse divergence.
Bazykin GA, Kondrashov FA, …, Sunyaev S, Kondrashov AS
Nature 2004 Jun 3 429(6991):558-62 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 17 Jun 2004

Organismal complexity, protein complexity, and gene duplicability.
Yang J, Lusk R, Li WH
Proc Natl Acad Sci U S A 2003 Dec 23 100(26):15661-5 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 8 Jun 2004

Mapping mutations on phylogenies.
Nielsen R
Syst Biol 2002 Oct 51(5):729-39 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 26 Apr 2004

Exon junction sequences as cryptic splice sites: implications for intron origin.
Sadusky T, Newman AJ, Dibb NJ
Curr Biol 2004 Mar 23 14(6):505-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Nicolas Galtier
Evaluated 6 Apr 2004

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process.
Lartillot N, Philippe H
Mol Biol Evol 2004 Jun 21(6):1095-109 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 22 Mar 2004

Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach.
Glinka S, Ometto L, …, Stephan W, De Lorenzo D
Genetics 2003 Nov 165(3):1269-78 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Nicolas Galtier
Evaluated 2 Mar 2004

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision.
Graur D, Martin W
Trends Genet 2004 Feb 20(2):80-6 [abstract on PubMed] [related articles] [order article]
Selected by | Nicolas Galtier / Christos Ouzounis
Evaluated 25 Feb 2004

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